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Related papers: One-way catalysis in a solvable lattice model

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We study the efficiency of a two-channel reaction between two walkers on a finite one-dimensional periodic lattice. The walkers perform a combination of synchronous and asynchronous jumps on the lattice and react instantaneously when they…

Statistical Mechanics · Physics 2007-05-23 E. Abad

Enzymes show two distinct transport behaviors in the presence of their substrates in solution. First, their diffusivity enhances with increasing substrate concentration. In addition, enzymes perform directional motion toward regions with…

Biological Physics · Physics 2018-11-06 Farzad Mohajerani , Xi Zhao , Ambika Somasundar , Darrell Velegol , Ayusman Sen

Single molecule manipulation techniques reveal that the mechanical resistance of a protein depends on the direction of the applied force. Using a lattice model of polymers, we show that changing the pulling direction leads to different…

Statistical Mechanics · Physics 2009-11-13 Sanjay Kumar , Debaprasad Giri

A simple model of the two-state ratchet type is proposed for molecular chemical engines that convert chemical free energy into mechanical work and vice versa. The engine works by catalyzing a chemical reaction and turning a rotor.…

Statistical Mechanics · Physics 2018-05-22 Kazuo Sasaki , Ryo Kanada , Satoshi Amari

We perform molecular dynamics simulations on an interacting electron gas confined to a cylindrical surface and subject to a radial magnetic field and the field of the positive background. In order to study the system at lowest energy states…

Statistical Mechanics · Physics 2009-11-07 Vishal Mehra , Jayme De Luca

We present numerical results for a chemical reaction of colloidal particles which are transported by a laminar fluid and are focused by periodic obstacles in such a way that the two components are well mixed and consequently the chemical…

Chemical Physics · Physics 2015-06-12 A. M. Lacasta , L. Ramirez-Piscina , J. M. Sancho , K. Lindenberg

This study explores the transformative potential of nanocatalysts, emphasizing their pivotal role in catalysis and material science. Key synthesis techniques, including chemical reduction and hybrid methods, are highlighted for their…

Materials Science · Physics 2025-01-24 Jairo Rondón , Angel Gonzalez-Lizardo , Claudio Lugo

A general system of particles (of one or several species) on a one dimensional lattice with boundaries is considered. Two general behaviors of such systems are investigated. The stationary behavior of the system, and the dominant way of the…

Statistical Mechanics · Physics 2015-06-24 Mohammad Khorrami , Amir Aghamohammadi

We consider one-dimensional stochastic differential equations with jumps in the general case. We introduce new technics based on local time and we prove new results on pathwise uniqueness and comparison theorems. Our approach are very easy…

Probability · Mathematics 2011-08-22 M. Benabdallah , S. Bouhadou , Y. Ouknine

Using an analytically tractable lattice model for reaction-diffusion processes of hard-core particles we demonstrate that under nonequilibrium conditions phase coexistence may arise even if the system is effectively one-dimensional as e.g.…

Statistical Mechanics · Physics 2007-05-23 Fatemeh Tabatabaei , Gunter M. Schütz

In the past one hundred years, deterministic rate equations have been successfully used to infer enzyme-catalysed reaction mechanisms and to estimate rate constants from reaction kinetics experiments conducted in vitro. In recent years,…

Subcellular Processes · Quantitative Biology 2013-12-02 Ramon Grima , Nils Walter , Santiago Schnell

We introduce a one-way, one-quantum cascade, whereby a single excitation proceeds one-directionwise in a ladder of energy levels. This makes a variation from more famous two-way cascades where the excitation can go up and down following its…

In a quantum ratchet accelerator system, a linearly increasing directed current can be dynamically generated without using a biased field. Generic quantum ratchet acceleration with full classical chaos [Gong and Brumer, Phys. Rev. Lett. 97,…

Quantum Physics · Physics 2009-11-13 Jiao Wang , Jiangbin Gong

A new method is introduced allowing to solve exactly the reactions A+A->inert and A+A->A on the 1D lattice with synchronous diffusional dynamics (simultaneous hopping of all particles). Exact connections are found relating densities and…

Condensed Matter · Physics 2010-10-12 Vladimir Privman

We study one-dimensional reaction-diffusion models described by master equations and their associated two-state quantum Hamiltonians. By choosing appropriate rates, the equations of motion decouple into certain subsets. We solve the first…

Condensed Matter · Physics 2009-10-22 I. Peschel , V. Rittenberg , U. Schultze

Single enzyme chemotaxis is a phenomenon by which a non-equilibrium spatial distribution of an enzyme is created and maintained by concentration gradients of the substrate and product of the catalyzed reaction. These gradients can arise…

Soft Condensed Matter · Physics 2022-06-14 Niladri Sekhar Mandal , Ayusman Sen , R. Dean Astumian

We study the states of one and two atoms in a rotating ring lattice in a Hubbard type tight-binding model. The model is developed carefully from basic principles in order to properly identify the physical observables. The one-particle…

Quantum Physics · Physics 2015-06-04 Juha Javanainen , Otim Odong , Jerome C. Sanders

We study diffusion-reaction processes on periodic square planar lattices and simple cubic (sc) lattices. Considered first is a single diffusing reactant undergoing an irreversible reaction upon first encounter with a stationary co-reactant…

Statistical Mechanics · Physics 2018-08-22 E. Abad , T. Abil , A. Santos , J. J. Kozak

The development of high-efficiency porous catalyst membranes critically depends on our understanding of where the majority of the chemical conversions occur within the porous structure. This requires mapping of chemical reactions and mass…

Enzyme-catalysed reactions involve two distinct timescales. There is a short timescale on which enzymes bind to substrate molecules to produce bound complexes, and a comparatively long timescale on which the complex is transformed into a…

Quantitative Methods · Quantitative Biology 2023-10-06 Taylor Kearney , Mark B. Flegg