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Predicting the behavior of complex systems is critical in many scientific and engineering domains, and hinges on the model's ability to capture their underlying dynamics. Existing methods encode the intrinsic dynamics of high-dimensional…

Computational Engineering, Finance, and Science · Computer Science 2025-11-18 Jingwen Cheng , Ruikun Li , Huandong Wang , Yong Li

Traditional knowledge graph (KG) embedding methods aim to represent entities and relations in a low-dimensional space, primarily focusing on static graphs. However, real-world KGs are dynamically evolving with the constant addition of…

Artificial Intelligence · Computer Science 2025-08-18 Yifei Li , Lingling Zhang , Hang Yan , Tianzhe Zhao , Zihan Ma , Muye Huang , Jun Liu

With the rapid advancement of Spatial Resolved Transcriptomics (SRT) technology, it is now possible to comprehensively measure gene transcription while preserving the spatial context of tissues. Spatial domain identification and gene…

Genomics · Quantitative Biology 2024-08-14 Donghai Fang , Fangfang Zhu , Dongting Xie , Wenwen Min

Masked autoencoders (MAEs) represent a prominent self-supervised learning paradigm in computer vision. Despite their empirical success, the underlying mechanisms of MAEs remain insufficiently understood. Recent studies have attempted to…

Computer Vision and Pattern Recognition · Computer Science 2025-02-28 Tao Huang , Yanxiang Ma , Shan You , Chang Xu

Graph simulation has recently received a surge of attention in graph processing and analytics. In real-life applications, e.g. social science, biology, and chemistry, many graphs are composed of a series of evolving graphs (i.e., temporal…

Machine Learning · Computer Science 2025-10-08 Sheng Xiang , Chenhao Xu , Dawei Cheng , Xiaoyang Wang , Ying Zhang

Several recent works have directly extended the image masked autoencoder (MAE) with random masking into video domain, achieving promising results. However, unlike images, both spatial and temporal information are important for video…

Computer Vision and Pattern Recognition · Computer Science 2023-08-25 David Fan , Jue Wang , Shuai Liao , Yi Zhu , Vimal Bhat , Hector Santos-Villalobos , Rohith MV , Xinyu Li

Dynamic graph embedding has gained great attention recently due to its capability of learning low dimensional graph representations for complex temporal graphs with high accuracy. However, recent advances mostly focus on learning node…

Machine Learning · Computer Science 2022-04-29 Mengjia Xu , Apoorva Vikram Singh , George Em Karniadakis

Textual graphs are ubiquitous in real-world applications, featuring rich text information with complex relationships, which enables advanced research across various fields. Textual graph representation learning aims to generate…

Machine Learning · Computer Science 2024-08-22 Wenbin Hu , Huihao Jing , Qi Hu , Haoran Li , Yangqiu Song

Self-supervised learning (SSL) has recently emerged as a key strategy for building foundation models in remote sensing, where the scarcity of annotated data limits the applicability of fully supervised approaches. In this work, we introduce…

Computer Vision and Pattern Recognition · Computer Science 2025-10-28 Vittorio Bernuzzi , Leonardo Rossi , Tomaso Fontanini , Massimo Bertozzi , Andrea Prati

A wide variety of real-world data, such as sea measurements, e.g., temperatures collected by distributed sensors and multiple unmanned aerial vehicles (UAV) trajectories, can be naturally represented as graphs, often exhibiting…

Machine Learning · Computer Science 2025-11-11 Sivaram Krishnan , Jinho Choi , Jihong Park

Significant disparities between the features of natural images and those inherent to histopathological images make it challenging to directly apply and transfer pre-trained models from natural images to histopathology tasks. Moreover, the…

Computer Vision and Pattern Recognition · Computer Science 2024-12-17 Zhenfeng Zhuang , Min Cen , Yanfeng Li , Fangyu Zhou , Lequan Yu , Baptiste Magnier , Liansheng Wang

Recently deep learning has been successfully applied to unsupervised active learning. However, current method attempts to learn a nonlinear transformation via an auto-encoder while ignoring the sample relation, leaving huge room to design…

Machine Learning · Computer Science 2021-11-09 Handong Ma , Changsheng Li , Xinchu Shi , Ye Yuan , Guoren Wang

Masked image generation (MIG) has demonstrated remarkable efficiency and high-fidelity images by enabling parallel token prediction. Existing methods typically rely solely on the model itself to learn semantic dependencies among visual…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Guotao Liang , Baoquan Zhang , Zhiyuan Wen , Zihao Han , Yunming Ye

Graph representation learning is a fundamental research issue in various domains of applications, of which the inductive learning problem is particularly challenging as it requires models to generalize to unseen graph structures during…

Machine Learning · Computer Science 2024-03-27 Hanxuan Yang , Zhaoxin Yu , Qingchao Kong , Wei Liu , Wenji Mao

Recent Self-Supervised Learning (SSL) methods encapsulating relational information via masking in Graph Neural Networks (GNNs) have shown promising performance. However, most existing approaches rely on random masking strategies in either…

Machine Learning · Computer Science 2025-03-12 Jongwon Park , Heesoo Jung , Hogun Park

Masked Autoencoder (MAE) is a notable method for self-supervised pretraining in visual representation learning. It operates by randomly masking image patches and reconstructing these masked patches using the unmasked ones. A key limitation…

Computer Vision and Pattern Recognition · Computer Science 2025-03-25 Han Guo , Ramtin Hosseini , Ruiyi Zhang , Sai Ashish Somayajula , Ranak Roy Chowdhury , Rajesh K. Gupta , Pengtao Xie

Graph representation learning is a fundamental problem for modeling relational data and benefits a number of downstream applications. Traditional Bayesian-based graph models and recent deep learning based GNN either suffer from…

Machine Learning · Computer Science 2024-03-27 Hanxuan Yang , Qingchao Kong , Wenji Mao

AI becomes increasingly vital for telecom industry, as the burgeoning complexity of upcoming mobile communication networks places immense pressure on network operators. While there is a growing consensus that intelligent network…

Machine Learning · Computer Science 2024-12-12 Shengheng Liu , Tianqi Zhang , Ningning Fu , Yongming Huang

We introduce the variational graph auto-encoder (VGAE), a framework for unsupervised learning on graph-structured data based on the variational auto-encoder (VAE). This model makes use of latent variables and is capable of learning…

Machine Learning · Statistics 2016-11-23 Thomas N. Kipf , Max Welling

The limits of molecular dynamics (MD) simulations of macromolecules are steadily pushed forward by the relentless developments of computer architectures and algorithms. This explosion in the number and extent (in size and time) of MD…

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