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We present Connection-Aware Motif Sequencing (CamS), a graph-to-sequence representation that enables decoder-only Transformers to learn molecular graphs via standard next-token prediction (NTP). For molecular property prediction,…

Machine Learning · Computer Science 2026-01-26 Zhuoyang Jiang , Yaosen Min , Peiran Jin , Lei Chen

For the architecture community, reasonable simulation time is a strong requirement in addition to performance data accuracy. However, emerging big data and AI workloads are too huge at binary size level and prohibitively expensive to run on…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-23 Wanling Gao , Jianfeng Zhan , Lei Wang , Chunjie Luo , Zhen Jia , Daoyi Zheng , Chen Zheng , Xiwen He , Hainan Ye , Haibin Wang , Rui Ren

Graph coloring is one of the most famous computational problems with applications in a wide range of areas such as planning and scheduling, resource allocation, and pattern matching. So far coloring problems are mostly studied on static…

Discrete Mathematics · Computer Science 2019-06-12 George B. Mertzios , Hendrik Molter , Viktor Zamaraev

Graph convolutional networks (GCNs) is a class of artificial neural networks for processing data that can be represented as graphs. Since financial transactions can naturally be constructed as graphs, GCNs are widely applied in the…

Machine Learning · Computer Science 2023-03-30 Song Li , Jiandong Zhou , Chong MO , Jin LI , Geoffrey K. F. Tso , Yuxing Tian

Graph models help understand network dynamics and evolution. Creating graphs with controlled topology and embedded partitions is a common strategy for evaluating community detection algorithms. However, existing benchmarks often overlook…

Social and Information Networks · Computer Science 2025-10-09 Laurent Brisson , Cécile Bothorel , Nicolas Duminy

When analyzing temporal networks, a fundamental task is the identification of dense structures (i.e., groups of vertices that exhibit a large number of links), together with their temporal span (i.e., the period of time for which the high…

Data Structures and Algorithms · Computer Science 2020-12-09 Edoardo Galimberti , Martino Ciaperoni , Alain Barrat , Francesco Bonchi , Ciro Cattuto , Francesco Gullo

The widespread use of graph data in various applications and the highly dynamic nature of today's networks have made it imperative to analyze structural trends in dynamic graphs on a continual basis. The shortest path is a fundamental…

Databases · Computer Science 2023-07-13 Qingshuai Feng , You Peng , Wenjie Zhang , Xuemin Lin , Ying Zhang

Temporal graphs are commonly used to represent complex systems and track the evolution of their constituents over time. Visualizing these graphs is crucial as it allows one to quickly identify anomalies, trends, patterns, and other…

Human-Computer Interaction · Computer Science 2025-02-24 Raphaël Tinarrage , Jean R. Ponciano , Claudio D. G. Linhares , Agma J. M. Traina , Jorge Poco

Diffusion models simulate the propagation of influence in networks. The design and evaluation of diffusion models has been subjective and empirical. When being applied to a network represented by a graph, the diffusion model generates a…

Social and Information Networks · Computer Science 2020-12-15 Fangqi Li

With the proliferation of temporal graph data, there is a growing demand for analyzing information propagation patterns during graph evolution. Existing graph analysis systems, mostly based on static snapshots, struggle to effectively…

Databases · Computer Science 2025-12-30 Jiacheng Ding , Cong Guo , Xiaofei Zhang

Recently, interest has grown in exploring the hypothesis that neural activity conveys information through precise spiking motifs. To investigate this phenomenon, various algorithms have been proposed to detect such motifs in Single Unit…

Neurons and Cognition · Quantitative Biology 2023-09-27 Laurent U Perrinet

In the context of spiking neural networks, temporal coding of signals is increasingly preferred over the rate coding hypothesis due to its advantages in processing speed and energy efficiency. In temporal coding, synaptic delays are crucial…

Neurons and Cognition · Quantitative Biology 2025-11-20 Thomas Kronland-Martinet , Stéphane Viollet , Laurent U Perrinet

Understanding the evolutionary patterns of real-world evolving complex systems such as human interactions, transport networks, biological interactions, and computer networks has important implications in our daily lives. Predicting future…

Machine Learning · Computer Science 2020-08-19 Khushnood Abbas , Alireza Abbasi , Dong Shi , Niu Ling , Mingsheng Shang , Chen Liong , Bolun Chen

Graphs are used to model interactions in a variety of contexts, and there is a growing need to quickly assess the structure of such graphs. Some of the most useful graph metrics are based on triangles, such as those measuring social…

Social and Information Networks · Computer Science 2014-10-21 C. Seshadhri , Ali Pinar , Tamara G. Kolda

Motifs, which have been established as building blocks for network structure, move beyond pair-wise connections to capture longer-range correlations in connections and activity. In spite of this, there are few generative graph models that…

Social and Information Networks · Computer Science 2023-08-03 Giselle Zeno , Timothy La Fond , Jennifer Neville

Historically studies of behaviour on networks have focused on the behaviour of individuals (node-based) or on the aggregate behaviour of the entire network. We propose a new method to decompose a temporal network into macroscale components…

Social and Information Networks · Computer Science 2018-08-16 Andrew Mellor

An edge cover of a graph is a set of edges such that every vertex has at least an adjacent edge in it. Previously, approximation algorithm for counting edge covers is only known for 3 regular graphs and it is randomized. We design a very…

Data Structures and Algorithms · Computer Science 2014-11-04 Chengyu Lin , Jingcheng Liu , Pinyan Lu

Temporal graphs are ubiquitous. Mining communities that are bursting in a period of time is essential to seek emergency events in temporal graphs. Unfortunately, most previous studies for community mining in temporal networks ignore the…

Social and Information Networks · Computer Science 2019-11-11 Hongchao Qin , Rong-Hua Li , Guoren Wang , Lu Qin , Ye Yuan , Zhiwei Zhang

Anytime neural networks (AnytimeNNs) are a promising solution to adaptively adjust the model complexity at runtime under various hardware resource constraints. However, the manually-designed AnytimeNNs are biased by designers' prior…

Machine Learning · Computer Science 2023-06-21 Guihong Li , Kartikeya Bhardwaj , Yuedong Yang , Radu Marculescu

The shortest path problem in graphs is fundamental to AI. Nearly all variants of the problem and relevant algorithms that solve them ignore edge-weight computation time and its common relation to weight uncertainty. This implies that taking…

Data Structures and Algorithms · Computer Science 2024-03-29 Eyal Weiss , Ariel Felner , Gal A. Kaminka