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Multi-view clustering has shown to be an effective method for analyzing underlying patterns in multi-view data. The performance of clustering can be improved by learning the consistency and complementarity between multi-view features,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-20 Shihao Dong , Yuhui Zheng , Huiying Xu , Xinzhong Zhu

Identifying cell clusters is a critical step for single-cell transcriptomics study. Despite the numerous clustering tools developed recently, the rapid growth of scRNA-seq volumes prompts for a more (computationally) efficient clustering…

Quantitative Methods · Quantitative Biology 2023-01-11 Nana Wei , Yating Nie , Lin Liu , Xiaoqi Zheng , Hua-Jun Wu4

Clustering analysis is fundamental in single-cell RNA sequencing (scRNA-seq) data analysis for elucidating cellular heterogeneity and diversity. Recent graph-based scRNA-seq clustering methods, particularly graph neural networks (GNNs),…

Machine Learning · Computer Science 2025-07-15 Ping Xu , Pengfei Wang , Zhiyuan Ning , Meng Xiao , Min Wu , Yuanchun Zhou

Constrained clustering has gained significant attention in the field of machine learning as it can leverage prior information on a growing amount of only partially labeled data. Following recent advances in deep generative models, we…

Machine Learning · Computer Science 2022-02-02 Laura Manduchi , Kieran Chin-Cheong , Holger Michel , Sven Wellmann , Julia E. Vogt

In today's data-driven digital era, the amount as well as complexity, such as multi-view, non-Euclidean, and multi-relational, of the collected data are growing exponentially or even faster. Clustering, which unsupervisely extracts valid…

Machine Learning · Computer Science 2025-01-10 Zhao Kang , Xuanting Xie , Bingheng Li , Erlin Pan

In this work, we modify the superparamagnetic clustering algorithm (SPC) by adding an extra weight to the interaction formula that considers which genes are regulated by the same transcription factor. With this modified algorithm that we…

Molecular Networks · Quantitative Biology 2010-12-23 M. P. Monsivais-Alonso , J. C. Navarro-Munoz , L. Riego-Ruiz , R. Lopez-Sandoval , H. C. Rosu

Single-molecule spectroscopy (SMS) is an exceptionally sensitive technique, but its inherently limited photon budget produces noisy data that can readily lead to subjective analyses, fitting errors, and reduced statistical power, obscuring…

Biological Physics · Physics 2026-03-19 Michael Lovemore , Joshua Botha , Bertus van Heerden , Tjaart Kruger

Spectral clustering is a popular clustering method. It first maps data into the spectral embedding space and then uses Kmeans to find clusters. However, the two decoupled steps prohibit joint optimization for the optimal solution. In…

Machine Learning · Computer Science 2024-12-17 Wengang Guo , Wei Ye

This research aims to develop a dynamic and scalable framework to facilitate harmonization of Common Data Elements (CDEs) across heterogeneous biomedical datasets by addressing challenges such as semantic heterogeneity, structural…

Information Retrieval · Computer Science 2025-06-04 Madan Krishnamurthy , Daniel Korn , Melissa A Haendel , Christopher J Mungall , Anne E Thessen

Automated high throughput plant phenotyping involves leveraging sensors, such as RGB, thermal and hyperspectral cameras (among others), to make large scale and rapid measurements of the physical properties of plants for the purpose of…

Computer Vision and Pattern Recognition · Computer Science 2021-06-24 Chao Ren , Justin Dulay , Gregory Rolwes , Duke Pauli , Nadia Shakoor , Abby Stylianou

Large language models (LLMs) with extended context windows have become increasingly prevalent for tackling complex tasks. However, the substantial Key-Value (KV) cache required for long-context LLMs poses significant deployment challenges.…

Computation and Language · Computer Science 2025-06-16 Jie Hu , Shengnan Wang , Yutong He , Ping Gong , Jiawei Yi , Juncheng Zhang , Youhui Bai , Renhai Chen , Gong Zhang , Cheng Li , Kun Yuan

This research introduces a new strategy in cluster ensemble selection by using Independency and Diversity metrics. In recent years, Diversity and Quality, which are two metrics in evaluation procedure, have been used for selecting basic…

Machine Learning · Statistics 2016-10-11 Muhammad Yousefnezhad , Ali Reihanian , Daoqiang Zhang , Behrouz Minaei-Bidgoli

Broad searches for continuous gravitational wave signals rely on hierarchies of follow-up stages for candidates above a given significance threshold. An important step to simplify these follow-ups and reduce the computational cost is to…

General Relativity and Quantum Cosmology · Physics 2021-03-24 Banafsheh Beheshtipour , Maria Alessandra Papa

We deal with the problem of semantic classification of challenging and highly-cluttered dataset. We present a novel, and yet a very simple classification technique by leveraging the ease of classifiability of any existing well separable…

Computer Vision and Pattern Recognition · Computer Science 2021-04-22 Ushasi Chaudhuri , Syomantak Chaudhuri , Subhasis Chaudhuri

The order of training samples can have a significant impact on the performance of a classifier. Curriculum learning is a method of ordering training samples from easy to hard. This paper proposes the novel idea of a curriculum learning…

Machine Learning · Computer Science 2024-11-12 Shonal Chaudhry , Anuraganand Sharma

Clustering is a popular form of unsupervised learning for geometric data. Unfortunately, many clustering algorithms lead to cluster assignments that are hard to explain, partially because they depend on all the features of the data in a…

Machine Learning · Computer Science 2020-09-23 Sanjoy Dasgupta , Nave Frost , Michal Moshkovitz , Cyrus Rashtchian

Clustering is a widely-used data mining tool, which aims to discover partitions of similar items in data. We introduce a new clustering paradigm, \emph{accordant clustering}, which enables the discovery of (predefined) group level insights.…

Machine Learning · Computer Science 2017-04-11 Amit Dhurandhar , Margareta Ackerman , Xiang Wang

We present a technique for clustering categorical data by generating many dissimilarity matrices and averaging over them. We begin by demonstrating our technique on low dimensional categorical data and comparing it to several other…

Machine Learning · Statistics 2017-09-20 Saeid Amiri , Bertrand Clarke , Jennifer Clarke

Fruit recognition using Deep Convolutional Neural Network (CNN) is one of the most promising applications in computer vision. In recent times, deep learning based classifications are making it possible to recognize fruits from images.…

Computer Vision and Pattern Recognition · Computer Science 2020-01-28 Shadman Sakib , Zahidun Ashrafi , Md. Abu Bakr Siddique

Clustering is a fundamental task in unsupervised learning, but most existing methods heavily rely on hyperparameters such as the number of clusters or other sensitive settings, limiting their applicability in real-world scenarios. To…

Machine Learning · Computer Science 2026-03-25 Lijun Zhang , Suyuan Liu , Siwei Wang , Shengju Yu , Xueling Zhu , Miaomiao Li , Xinwang Liu