Related papers: A Simple 4-Approximation Algorithm for Maximum Agr…
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…
We study the unweighted Tree Augmentation Problem (TAP) via the Lasserre (Sum of Squares) system. We prove an approximation guarantee of ($1.8+\epsilon$) relative to an SDP relaxation, which matches the combinatorial approximation guarantee…
Approximation algorithms for the prize-collecting Steiner forest problem (PCSF) have been a subject of research for over three decades, starting with the seminal works of Agrawal, Klein, and Ravi and Goemans and Williamson on Steiner forest…
We introduce a lower bounding technique for the min max correlation clustering problem and, based on this technique, a combinatorial 4-approximation algorithm for complete graphs. This improves upon the previous best known approximation…
We present a bounded-error quantum algorithm for evaluating Min-Max trees. For a tree of size N our algorithm makes N^{1/2+o(1)} comparison queries, which is close to the optimal complexity for this problem.
In the Tree Deletion Set problem the input is a graph G together with an integer k. The objective is to determine whether there exists a set S of at most k vertices such that G-S is a tree. The problem is NP-complete and even NP-hard to…
Polytrees are a subclass of Bayesian networks that seek to capture the conditional dependencies between a set of $n$ variables as a directed forest and are motivated by their more efficient inference and improved interpretability. Since the…
The capacitated tree cover problem with edge loads is a variant of the tree cover problem, where we are given facility opening costs, edge costs and loads, as well as vertex loads. We try to find a tree cover of minimum cost such that the…
Cartesian tree matching is the problem of finding all substrings of a given text which have the same Cartesian trees as that of a given pattern. So far there is one linear-time solution for Cartesian tree matching, which is based on the KMP…
Many probabilistic inference tasks involve summations over exponentially large sets. Recently, it has been shown that these problems can be reduced to solving a polynomial number of MAP inference queries for a model augmented with randomly…
We give new rounding schemes for the standard linear programming relaxation of the correlation clustering problem, achieving approximation factors almost matching the integrality gaps: - For complete graphs our appoximation is $2.06 -…
The weighted tree augmentation problem (WTAP) is a fundamental network design problem. We are given an undirected tree $G = (V,E)$, an additional set of edges $L$ called links and a cost vector $c \in \mathbb{R}^L_{\geq 1}$. The goal is to…
The maximum independent set problem is a classic optimization problem that has also been studied quite intensively in the distributed setting. While the problem is hard to approximate in general, there are good approximation algorithms…
In the prize-collecting Steiner forest (PCSF) problem, we are given an undirected graph $G=(V,E)$, edge costs $\{c_e\geq 0\}_{e\in E}$, terminal pairs $\{(s_i,t_i)\}_{i=1}^k$, and penalties $\{\pi_i\}_{i=1}^k$ for each terminal pair; the…
Decision forests induce supervised similarities through the partition structure of their trees. Yet forest proximity computation is still often treated as a quadratic operation in the number of samples, which limits scalability and…
We present a data stream algorithm for estimating the size of the maximum matching of a low arboricity graph. Recall that a graph has arboricity $\alpha$ if its edges can be partitioned into at most $\alpha$ forests and that a planar graph…
Determining the interaction partners among protein/domain families poses hard computational problems, in particular in the presence of paralogous proteins. Available approaches aim to identify interaction partners among protein/domain…
In this paper we propose an approach for computing multiple high-quality near-isometric dense correspondences between a pair of 3D shapes. Our method is fully automatic and does not rely on user-provided landmarks or descriptors. This…
Bipartite Correlation clustering is the problem of generating a set of disjoint bi-cliques on a set of nodes while minimizing the symmetric difference to a bipartite input graph. The number or size of the output clusters is not constrained…
The firefighter problem is NP-hard and admits a $(1-1/e)$ approximation based on rounding the canonical LP. In this paper, we first show a matching integrality gap of $(1-1/e+\epsilon)$ on the canonical LP. This result relies on a powerful…