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Inferring trajectories from longitudinal spatially-resolved omics data is fundamental to understanding the dynamics of structural and functional tissue changes in development, regeneration and repair, disease progression, and response to…

Machine Learning · Computer Science 2026-05-15 Santanu Subhash Rathod , Francesco Ceccarelli , Sean B. Holden , Pietro Liò , Xiao Zhang , Jovan Tanevski

Retinal fundus images can be an invaluable diagnosis tool for screening epidemic diseases like hypertension or diabetes. And they become especially useful when the arterioles and venules they depict are clearly identified and annotated.…

Computer Vision and Pattern Recognition · Computer Science 2023-04-03 Angel Victor Juanco Muller , Joao F. C. Mota , Keith A. Goatman , Corne Hoogendoorn

A key human ability is to decompose a scene into distinct objects and use their relationships to understand the environment. Object-centric learning aims to mimic this process in an unsupervised manner. Recently, the slot attention-based…

Computer Vision and Pattern Recognition · Computer Science 2025-09-03 Pinzhuo Tian , Shengjie Yang , Hang Yu , Alex C. Kot

Alignment plays a fundamental role in many machine learning problems, such as multi-network analysis, multimodal learning, and point cloud registration. Recent works increasingly leverage optimal transport (OT) for distributional alignment,…

Machine Learning · Computer Science 2026-05-26 Qi Yu , Ruizhong Qiu , Zhichen Zeng , My T. Thai , Huan Liu , Hanghang Tong

The Segment Anything Model (SAM) has gained popularity as a versatile image segmentation method, thanks to its strong generalization capabilities across various domains. However, when applied to optic disc (OD) and optic cup (OC)…

Computer Vision and Pattern Recognition · Computer Science 2025-02-11 Jinchen Yu , Yongwei Nie , Fei Qi , Wenxiong Liao , Hongmin Cai

Ophthalmic images may contain identical-looking pathologies that can cause failure in automated techniques to distinguish different retinal degenerative diseases. Additionally, reliance on large annotated datasets and lack of knowledge…

Image and Video Processing · Electrical Eng. & Systems 2022-08-02 Sharif Amit Kamran , Khondker Fariha Hossain , Alireza Tavakkoli , Stewart Lee Zuckerbrod , Salah A. Baker

The optimal transport (OT) map offers the most economical way to transfer one probability measure distribution to another. Classical OT theory does not involve a discussion of preserving topological connections and orientations in…

General Topology · Mathematics 2025-07-03 Yuping Lv , Qi Zhao , Xuebin Chang , Wei Zeng

Optical coherence tomography (OCT) is a non-invasive 3D modality widely used in ophthalmology for imaging the retina. Achieving automated, anatomically coherent retinal layer segmentation on OCT is important for the detection and monitoring…

Image and Video Processing · Electrical Eng. & Systems 2022-10-26 Botond Fazekas , Guilherme Aresta , Dmitrii Lachinov , Sophie Riedl , Julia Mai , Ursula Schmidt-Erfurth , Hrvoje Bogunovic

This study introduces a novel framework for enhancing domain generalization in medical imaging, specifically focusing on utilizing unlabelled multi-view colour fundus photographs. Unlike traditional approaches that rely on single-view…

Computer Vision and Pattern Recognition · Computer Science 2024-03-26 Ze Chen , Gongyu Zhang , Jiayu Huo , Joan Nunez do Rio , Charalampos Komninos , Yang Liu , Rachel Sparks , Sebastien Ourselin , Christos Bergeles , Timothy Jackson

Fundus photography is prone to suffer from image quality degradation that impacts clinical examination performed by ophthalmologists or intelligent systems. Though enhancement algorithms have been developed to promote fundus observation on…

Image and Video Processing · Electrical Eng. & Systems 2023-09-12 Heng Li , Haofeng Liu , Huazhu Fu , Yanwu Xu , Hui Shu , Ke Niu , Yan Hu , Jiang Liu

This paper proposes a novel transformer-based model architecture for medical imaging problems involving analysis of vertebrae. It considers two applications of such models in MR images: (a) detection of spinal metastases and the related…

Image and Video Processing · Electrical Eng. & Systems 2022-06-28 Rhydian Windsor , Amir Jamaludin , Timor Kadir , Andrew Zisserman

In the last decades, large datasets of fundus photographs have been collected in diabetic retinopathy (DR) screening networks. Through deep learning, these datasets were used to train automatic detectors for DR and a few other frequent…

Computer Vision and Pattern Recognition · Computer Science 2020-02-11 Gwenolé Quellec , Mathieu Lamard , Pierre-Henri Conze , Pascale Massin , Béatrice Cochener

Layer segmentation is important to quantitative analysis of retinal optical coherence tomography (OCT). Recently, deep learning based methods have been developed to automate this task and yield remarkable performance. However, due to the…

Image and Video Processing · Electrical Eng. & Systems 2023-12-07 Hong Liu , Dong Wei , Donghuan Lu , Xiaoying Tang , Liansheng Wang , Yefeng Zheng

Optic disc (OD) and optic cup (OC) are regions of prominent clinical interest in a retinal fundus image. They are the primary indicators of a glaucomatous condition. With the advent and success of deep learning for healthcare research,…

Image and Video Processing · Electrical Eng. & Systems 2020-12-15 Aniketh Manjunath , Subramanya Jois , Chandra Sekhar Seelamantula

Effective Out-of-Distribution (OOD) detection is criti-cal for ensuring the reliability of semantic segmentation models, particularly in complex road environments where safety and accuracy are paramount. Despite recent advancements in large…

Computer Vision and Pattern Recognition · Computer Science 2025-08-21 Jeonghyo Song , Kimin Yun , DaeUng Jo , Jinyoung Kim , Youngjoon Yoo

Reliable detection of retinal diseases from fundus images is challenged by the variability in imaging quality, subtle early-stage manifestations, and domain shift across datasets. In this study, we systematically evaluated a Vision…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Jan Benedikt Ruhland , Thorsten Papenbrock , Jan-Peter Sowa , Ali Canbay , Nicole Eter , Bernd Freisleben , Dominik Heider

Objects, in the real world, rarely occur in isolation and exhibit typical arrangements governed by their independent utility, and their expected interaction with humans and other objects in the context. For example, a chair is expected near…

Computer Vision and Pattern Recognition · Computer Science 2024-11-21 Sharat Agarwal

Artificial intelligence applied to retinal images offers significant potential for recognizing signs and symptoms of retinal conditions and expediting the diagnosis of eye diseases and systemic disorders. However, developing generalized…

Image and Video Processing · Electrical Eng. & Systems 2024-08-19 Boa Jang , Youngbin Ahn , Eun Kyung Choe , Chang Ki Yoon , Hyuk Jin Choi , Young-Gon Kim

Purpose: Convolutional neural networks can be trained to detect various conditions or patient traits based on retinal fundus photographs, some of which, such as the patient sex, are invisible to the expert human eye. Here we propose a…

Computer Vision and Pattern Recognition · Computer Science 2023-01-18 Parsa Delavari , Gulcenur Ozturan , Ozgur Yilmaz , Ipek Oruc

We introduce Contextual Vision Transformers (ContextViT), a method designed to generate robust image representations for datasets experiencing shifts in latent factors across various groups. Derived from the concept of in-context learning,…

Computer Vision and Pattern Recognition · Computer Science 2023-10-02 Yujia Bao , Theofanis Karaletsos
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