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We present a new algorithm for the identification of bound regions from ChIP-seq experiments. Our method for identifying statistically significant peaks from read coverage is inspired by the notion of persistence in topological data…

Genomics · Quantitative Biology 2010-05-06 Valerie Hower , Steven N. Evans , Lior Pachter

Texture-based classification solutions have proven their significance in many domains, from industrial inspections to health-related applications. New methods have been developed based on texture feature learning and CNN-based architectures…

Computer Vision and Pattern Recognition · Computer Science 2022-10-21 Vijay Pandey , Trapti Kalra , Mayank Gubba , Mohammed Faisal

Dominant features of spatial data are connected structures or patterns that emerge from location-based variation and manifest at specific scales or resolutions. To identify dominant features, we propose a sequential application of…

Methodology · Statistics 2020-12-17 Roman Flury , Florian Gerber , Bernhard Schmid , Reinhard Furrer

Network centrality measures play a crucial role in understanding graph structures, assessing the importance of nodes, paths, or cycles based on directed or reciprocal interactions encoded by vertices and edges. Estrada and Ross extended…

Computational Geometry · Computer Science 2024-04-26 John Rick D. Manzanares , Paul Samuel P. Ignacio

Building Information Modeling (BIM) technology is a key component of modern construction engineering and project management workflows. As-is BIM models that represent the spatial reality of a project site can offer crucial information to…

Computer Vision and Pattern Recognition · Computer Science 2023-05-26 Seongyong Kim , Yosuke Yajima , Jisoo Park , Jingdao Chen , Yong K. Cho

Dense ground displacement measurements are crucial for geological studies but are impractical to collect directly. Traditionally, displacement fields are estimated using patch matching on optical satellite images from different acquisition…

Computer Vision and Pattern Recognition · Computer Science 2025-04-21 Juliette Bertrand , Sophie Giffard-Roisin , James Hollingsworth , Julien Mairal

Given the necessity of connecting the unconnected, covering blind spots has emerged as a critical task in the next-generation wireless communication network. A direct solution involves obtaining a coverage manifold that visually showcases…

Networking and Internet Architecture · Computer Science 2023-12-12 Ruibo Wang , Washim Uddin Mondal , Mustafa A. Kishk , Vaneet Aggarwal , Mohamed-Slim Alouini

Techniques from computational topology, in particular persistent homology, are becoming increasingly relevant for data analysis. Their stable metrics permit the use of many distance-based data analysis methods, such as multidimensional…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

Heterogeneous Information Network (HIN) embedding refers to the low-dimensional projections of the HIN nodes that preserve the HIN structure and semantics. HIN embedding has emerged as a promising research field for network analysis as it…

Machine Learning · Computer Science 2021-08-10 Rayyan Ahmad Khan , Martin Kleinsteuber

A hierarchical scheme for clustering data is presented which applies to spaces with a high number of dimension ($N_{_{D}}>3$). The data set is first reduced to a smaller set of partitions (multi-dimensional bins). Multiple clustering…

Data Analysis, Statistics and Probability · Physics 2017-10-16 Kevin McIlhany , Stephen Wiggins

An anomalous mean-field solution is known to capture the non trivial phase diagram of the Ising model in annealed complex networks. Nevertheless the critical fluctuations in random complex networks remain mean-field. Here we show that a…

Statistical Mechanics · Physics 2015-05-14 Serena Bradde , Fabio Caccioli , Luca Dall'Asta , Ginestra Bianconi

In remote sensing imagery, multi class change detection (MCD) is crucial for fine grained monitoring, yet it has long been constrained by complex scene variations and the scarcity of detailed annotations. To address this, we propose the…

Computer Vision and Pattern Recognition · Computer Science 2026-03-24 Kai Zheng , Hang-Cheng Dong , Shoulei Liu , Zhenkai Wu , Fupeng Wei , Lei Ding , Wei Zhang

We argue that robust dense SLAM systems can make valuable use of the layers of features coming from a standard CNN as a pyramid of `semantic texture' which is suitable for dense alignment while being much more robust to nuisance factors…

Computer Vision and Pattern Recognition · Computer Science 2017-08-30 Jan Czarnowski , Stefan Leutenegger , Andrew Davison

A typical 2D-to-3D pipeline takes multi-view images as input, where a Vision Foundation Model (VFM) extracts features that are spatially upsampled to dense representations for 3D reconstruction. If dense features across views preserve…

Computer Vision and Pattern Recognition · Computer Science 2026-03-09 Ling Xiao , Yuliang Xiu , Yue Chen , Guoming Wang , Toshihiko Yamasaki

Automatic recognition and segmentation methods now become the essential requirement in identifying co-seismic landslides, which are fundamental for disaster assessment and mitigation in large-scale earthquakes. This approach used to be…

Computer Vision and Pattern Recognition · Computer Science 2023-10-27 Qingsong Xu , Chaojun Ouyang , Tianhai Jiang , Xuanmei Fan , Duoxiang Cheng

This paper introduces Semantic Haar-Adaptive Refined Pyramid Network (SHARP-Net), a novel architecture for semantic segmentation. SHARP-Net integrates a bottom-up pathway featuring Inception-like blocks with varying filter sizes (3x3$ and…

Computer Vision and Pattern Recognition · Computer Science 2024-08-20 Rasha Alshawi , Md Meftahul Ferdaus , Md Tamjidul Hoque , Kendall Niles , Ken Pathak , Steve Sloan , Mahdi Abdelguerfi

The statistical analysis of marked point processes requires disentangling complex spatial arrangements from attribute-dependent interactions. While classical summary statistics are effective for second-order dependencies, they frequently…

Methodology · Statistics 2026-05-15 Matthias Eckardt , Mehdi Moradi

Real-time semantic segmentation of LiDAR data is crucial for autonomously driving vehicles, which are usually equipped with an embedded platform and have limited computational resources. Approaches that operate directly on the point cloud…

Computer Vision and Pattern Recognition · Computer Science 2021-11-30 Shijie Li , Xieyuanli Chen , Yun Liu , Dengxin Dai , Cyrill Stachniss , Juergen Gall

A time-delay embedding (TDE), grounded in the framework of Takens's Theorem, provides a mechanism to represent and analyze the inherent dynamics of time-series data. Recently, topological data analysis (TDA) methods have been applied to…

Methodology · Statistics 2024-10-18 Sixtus Dakurah , Jessi Cisewski-Kehe

Topological Data Analysis (TDA) uses insights from topology to create representations of data able to capture global and local geometric and topological properties. Its methods have successfully been used to develop estimations of fractal…

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