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The ongoing explosion of genome sequence data is transforming how we reconstruct and understand the histories of biological systems. Across biological scales, from individual cells to populations and species, trees-based models provide a…

Populations and Evolution · Quantitative Biology 2025-12-08 Yun Deng , Shing H. Zhan , Yulin Zhang , Chao Zhang , Bingjie Chen

Counterfactual explanations are usually generated through heuristics that are sensitive to the search's initial conditions. The absence of guarantees of performance and robustness hinders trustworthiness. In this paper, we take a…

Machine Learning · Computer Science 2021-06-28 Axel Parmentier , Thibaut Vidal

As machine learning models are increasingly deployed in sensitive application areas, the demand for interpretable and trustworthy decision-making has increased. Random Forests (RF), despite their widespread use and strong performance on…

Assume we are given a set of items from a general metric space, but we neither have access to the representation of the data nor to the distances between data points. Instead, suppose that we can actively choose a triplet of items (A,B,C)…

Machine Learning · Statistics 2018-06-19 Siavash Haghiri , Damien Garreau , Ulrike von Luxburg

Neural Networks and Decision Trees: two popular techniques for supervised learning that are seemingly disconnected in their formulation and optimization method, have recently been combined in a single construct. The connection pivots on…

Machine Learning · Statistics 2020-02-27 Giuseppe Nuti , Lluís Antoni Jiménez Rugama , Kaspar Thommen

Despite widespread interest and practical use, the theoretical properties of random forests are still not well understood. In this paper we contribute to this understanding in two ways. We present a new theoretically tractable variant of…

Machine Learning · Statistics 2013-10-08 Misha Denil , David Matheson , Nando de Freitas

Continual learning based on data stream mining deals with ubiquitous sources of Big Data arriving at high-velocity and in real-time. Adaptive Random Forest ({\em ARF}) is a popular ensemble method used for continual learning due to its…

Machine Learning · Computer Science 2019-05-16 Diego Marrón , Eduard Ayguadé , José Ramon Herrero , Albert Bifet

Interpretable machine learning has emerged as central in leveraging artificial intelligence within high-stakes domains such as healthcare, where understanding the rationale behind model predictions is as critical as achieving high…

Machine Learning · Computer Science 2024-04-30 Christel Sirocchi , Martin Urschler , Bastian Pfeifer

We adapt the idea of random projections applied to the output space, so as to enhance tree-based ensemble methods in the context of multi-label classification. We show how learning time complexity can be reduced without affecting…

Machine Learning · Statistics 2021-07-02 Arnaud Joly , Pierre Geurts , Louis Wehenkel

Large language models achieve strong reasoning performance, yet existing decoding strategies either explore blindly (random sampling) or redundantly (independent multi-sampling). We propose Entropy-Tree, a tree-based decoding method that…

Computation and Language · Computer Science 2026-01-23 Longxuan Wei , Yubo Zhang , Zijiao Zhang , Zhihu Wang , Shiwan Zhao , Tianyu Huang , Huiting Zhao , Chenfei Liu , Shenao Zhang , Junchi Yan

We introduce a neural network that represents sentences by composing their words according to induced binary parse trees. We use Tree-LSTM as our composition function, applied along a tree structure found by a fully differentiable natural…

Computation and Language · Computer Science 2020-01-16 Jean Maillard , Stephen Clark , Dani Yogatama

Tree-based methods are popular machine learning techniques used in various fields. In this work, we review their foundations and a general framework the importance sampled learning ensemble (ISLE) that accelerates their fitting process.…

Machine Learning · Statistics 2022-05-02 Yinuo Zeng

The contribution of this work is twofold: (1) We introduce a collection of ensemble methods for time series forecasting to combine predictions from base models. We demonstrate insights on the power of ensemble learning for forecasting,…

Machine Learning · Computer Science 2021-04-26 Julia Gastinger , Sébastien Nicolas , Dušica Stepić , Mischa Schmidt , Anett Schülke

Although neural networks are a powerful tool, their widespread use is hindered by the opacity of their decisions and their black-box nature, which result in a lack of trustworthiness. To alleviate this problem, methods in the field of…

Machine Learning · Computer Science 2025-11-13 Helena Monke , Benjamin Fresz , Marco Bernreuther , Yilin Chen , Marco F. Huber

This work presents a new classifier that is specifically designed to be fully interpretable. This technique determines the probability of a class outcome, based directly on probability assignments measured from the training data. The…

Machine Learning · Statistics 2017-10-31 Sapan Agarwal , Corey M. Hudson

Variable trees are a new method for the exploration of discrete multivariate data. They display nested subsets and corresponding frequencies and percentages. Manual calculation of these quantities can be laborious, especially when there are…

Computation · Statistics 2021-02-08 Nick Barrowman , Richard J. Webster

We introduce WildWood (WW), a new ensemble algorithm for supervised learning of Random Forest (RF) type. While standard RF algorithms use bootstrap out-of-bag samples to compute out-of-bag scores, WW uses these samples to produce improved…

Machine Learning · Computer Science 2023-06-14 Stéphane Gaïffas , Ibrahim Merad , Yiyang Yu

We propose a novel tree-based ensemble method named Selective Cascade of Residual ExtraTrees (SCORE). SCORE draws inspiration from representation learning, incorporates regularized regression with variable selection features, and utilizes…

Machine Learning · Computer Science 2020-09-30 Qimin Liu , Fang Liu

Decision forests, including random forests and gradient boosting trees, remain the leading machine learning methods for many real-world data problems, especially on tabular data. However, most of the current implementations only operate in…

Machine Learning · Computer Science 2025-06-27 Haoyin Xu , Jayanta Dey , Sambit Panda , Joshua T. Vogelstein

Ensemble learning is traditionally justified as a variance-reduction strategy, explaining its strong performance for unstable predictors such as decision trees. This explanation, however, does not account for ensembles constructed from…

Machine Learning · Statistics 2025-12-30 Ernest Fokoué
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