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We present an implementation of interval analysis and mixed monotone interval reachability analysis as function transforms in Python, fully composable with the computational framework JAX. The resulting toolbox inherits several key features…

Systems and Control · Electrical Eng. & Systems 2024-05-02 Akash Harapanahalli , Saber Jafarpour , Samuel Coogan

In this paper, we introduce si4onnx, a package for performing selective inference on deep learning models. Techniques such as CAM in XAI and reconstruction-based anomaly detection using VAE can be interpreted as methods for identifying…

Machine Learning · Computer Science 2025-01-30 Teruyuki Katsuoka , Tomohiro Shiraishi , Daiki Miwa , Shuichi Nishino , Ichiro Takeuchi

We present GIGA-Lens: a gradient-informed, GPU-accelerated Bayesian framework for modeling strong gravitational lensing systems, implemented in TensorFlow and JAX. The three components, optimization using multi-start gradient descent,…

Instrumentation and Methods for Astrophysics · Physics 2022-08-16 A. Gu , X. Huang , W. Sheu , G. Aldering , A. S. Bolton , K. Boone , A. Dey , A. Filipp , E. Jullo , S. Perlmutter , D. Rubin , E. F. Schlafly , D. J. Schlegel , Y. Shu , S. H. Suyu

We motivate the use of differentiable probabilistic programming techniques in order to account for the large model-space inherent to astrophysical $\gamma$-ray analyses. Targeting the longstanding Galactic Center $\gamma$-ray Excess (GCE)…

High Energy Astrophysical Phenomena · Physics 2026-04-13 Siddharth Mishra-Sharma , Tracy R. Slatyer , Yitian Sun , Yuqing Wu

The fitting of spectral lines is a common step in the analysis of line observations and simulations. However, the observational noise, the presence of multiple velocity components, and potentially large data sets make it a non-trivial task.…

Astrophysics of Galaxies · Physics 2024-03-08 Mika Juvela , Devika Tharakkal

The imaging performance and sensitivity of an X-ray telescope when observing astrophysical sources are primarily governed by the optical design, geometrical uncertainties (figure errors, surface roughness, and mirror alignment…

Instrumentation and Methods for Astrophysics · Physics 2024-05-13 Neeraj K. Tiwari , Santosh V. Vadawale , N. P. S. Mithun , C. S. Vaishnava , Bharath Saiguhan

Bayesian models of cognition have gained considerable traction in computational neuroscience and psychiatry. Their scopes are now expected to expand rapidly to artificial intelligence, providing general inference frameworks to support…

Neural and Evolutionary Computing · Computer Science 2025-08-07 Nicolas Legrand , Lilian Weber , Peter Thestrup Waade , Anna Hedvig Møller Daugaard , Mojtaba Khodadadi , Nace Mikuš , Chris Mathys

Estimating parameters of Partial Differential Equations (PDEs) from noisy and indirect measurements often requires solving ill-posed inverse problems. These so called parameter estimation or inverse medium problems arise in a variety of…

Mathematical Software · Computer Science 2016-12-15 Lars Ruthotto , Eran Treister , Eldad Haber

To enhance the efficiency, scalability, and cross-survey applicability of stellar parameter inference in large spectroscopic datasets, we present a modular, parallelized Python framework with automated error estimation, built on the LAMOST…

Epithelial tissues dynamically reshape through local mechanical interactions among cells, a process well captured by vertex models. Yet their many tunable parameters make inference and optimization challenging, motivating computational…

Axisymmetric Jeans modelling is widely used to infer galaxy mass profiles from integral-field kinematics, but existing implementations maintain tractability by adopting highly restricted anisotropy prescriptions. I present a new spectral…

Astrophysics of Galaxies · Physics 2026-03-03 Michele Cappellari

We introduce synax, a novel library for automatically differentiable simulation of Galactic synchrotron emission. Built on the JAX framework, synax leverages JAX's capabilities, including batch acceleration, just-in-time compilation, and…

Instrumentation and Methods for Astrophysics · Physics 2025-03-26 Kangning Diao , Zack Li , Richard D. P. Grumitt , Yi Mao

Spatially resolved transcriptomics is a fast-developing set of technologies that enables the measurement of localized gene expression across spatial locations in a sample. Detecting spatially varying genes is critical for analyzing such…

Applications · Statistics 2026-04-22 Pritam Dey , Rajarshi Guhaniyogi , Yang Ni , Bani K. Mallick

We present jax-cosmo, a library for automatically differentiable cosmological theory calculations. It uses the JAX library, which has created a new coding ecosystem, especially in probabilistic programming. As well as batch acceleration,…

Cosmology and Nongalactic Astrophysics · Physics 2023-05-01 Jean-Eric Campagne , François Lanusse , Joe Zuntz , Alexandre Boucaud , Santiago Casas , Minas Karamanis , David Kirkby , Denise Lanzieri , Yin Li , Austin Peel

We demonstrate a GPU-accelerated nested sampling framework for efficient high-dimensional Bayesian inference in cosmology. Using JAX-based neural emulators and likelihoods for cosmic microwave background and cosmic shear analyses, our…

Cosmology and Nongalactic Astrophysics · Physics 2025-10-08 Toby Lovick , David Yallup , Davide Piras , Alessio Spurio Mancini , Will Handley

The characterization of exoplanet requires reliable determination of the fundamental parameters of their host stars. Spectral fitting plays an important role in this process. For the majority of stellar parameters matching synthetic spectra…

Solar and Stellar Astrophysics · Physics 2023-03-29 Ansgar Wehrhahn , Nikolai Piskunov , Tanja Ryabchikova

Bayesian inference is a widely used and powerful analytical technique in fields such as astronomy and particle physics but has historically been underutilized in some other disciplines including semiconductor devices. In this work, we…

Data Analysis, Statistics and Probability · Physics 2019-11-28 Rachel C. Kurchin , Giuseppe Romano , Tonio Buonassisi

Although Raman spectroscopy is widely used for the investigation of biomedical samples and has a high potential for use in clinical applications, it is not common in clinical routines. One of the factors that obstruct the integration of…

Data Analysis, Statistics and Probability · Physics 2022-01-20 Darina Storozhuk , Oleg Ryabchykov , Juergen Popp , Thomas Bocklitz

NEMESISPY is a Python package developed to perform parametric atmospheric modelling and radiative transfer calculation for the retrievals of exoplanetary spectra. It is a recent development of the well-established Fortran NEMESIS library…

Earth and Planetary Astrophysics · Physics 2024-07-10 Jingxuan Yang , Juan Alday , Patrick Irwin

Hyperspectral unmixing is an important remote sensing task with applications including material identification and analysis. Characteristic spectral features make many pure materials identifiable from their visible-to-infrared spectra, but…

Computer Vision and Pattern Recognition · Computer Science 2020-07-14 John Janiczek , Parth Thaker , Gautam Dasarathy , Christopher S. Edwards , Philip Christensen , Suren Jayasuriya