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Eukaryotic cells and intracellular pathogens such as bacteria or viruses utilize the actin polymerization machinery to propel themselves forward. Thereby, the onset of motion and choice of direction may be the result of a spontaneous…

Soft Condensed Matter · Physics 2009-09-04 Karin John , Denis Caillerie , Philippe Peyla , Mourad Ismail , Annie Raoult , Jacques Prost

Cellular Potts models are broadly applied across developmental biology and cancer research. We overcome limitations of the traditional approach, which reinterprets a modified Metropolis sampling as ad hoc dynamics, by introducing a physical…

Statistical Mechanics · Physics 2025-06-19 Roman Belousov , Sabrina Savino , Prachiti Moghe , Takashi Hiiragi , Lamberto Rondoni , Anna Erzberger

We explore the consequences of introducing higher-order interactions in a geometric complex network of Morris-Lecar neurons. We focus on the regime where travelling synchronization waves are observed out of a first-neighbours based…

Pattern Formation and Solitons · Physics 2019-11-20 A. Tlaie , I. Leyva , I. Sendiña

We study the order-disorder transition in a collection of polar self-propelled particles, interacting through a distance dependent short range alignment interaction. A distance dependent interaction parameter $a_0$ is introduced such that…

Statistical Mechanics · Physics 2016-12-13 Sudipta Pattanayak , Shradha Mishra

We address the interactions between optical solitons in the system with longitudinally varying nonlocality degree and nonlinearity strength. We consider a physical model describing light propagation in nematic liquid crystals featuring a…

Pattern Formation and Solitons · Physics 2009-11-13 Fangwei Ye , Yaroslav V. Kartashov , Lluis Torner

We propose a new mechanism of nonlinear nonreciprocal transport in magnetic systems. By considering a noncoplanar magnetic ordering on a bilayer triangular lattice, we clarify that a local scalar chirality degree of freedom is a source of…

Strongly Correlated Electrons · Physics 2022-09-23 Satoru Hayami , Megumi Yatsushiro

The possibility of ferromagnetic ordering is revisited in the band model. The coherent potential approximation decoupling has been used for the strong on-site Coulomb interaction. The driving forces towards the ferromagnetism are the…

Strongly Correlated Electrons · Physics 2016-08-16 G. Górski , J. Mizia

We study the spatio-temporal dynamics of a model of polar active fluid in two dimensions. The system exhibits a transition from an isotropic to a polarized state as a function of density. The uniform polarized state is, however, unstable…

Soft Condensed Matter · Physics 2011-12-08 Luca Giomi , M. Cristina Marchetti

Synchronous and directed ciliary beating in trachea allows transport and ejection of virus and dust from the body. This ciliary function depends on the coordinated configuration of basal bodies (root of cilia) in apical cell membrane.…

Cell Behavior · Quantitative Biology 2020-03-19 Toshinori Namba , Shuji Ishihara

Collective movement is observed widely in nature, where individuals interact locally to produce globally ordered, coherent motion. In typical models of collective motion, each individual takes the average direction of multiple neighbors,…

Quantitative Methods · Quantitative Biology 2026-01-23 Yogesh Kumar KC , Arshed Nabeel , Srikanth Iyer , Vishwesha Guttal

Intracellular transport is based on molecular motors that pull cargos along cytoskeletal filaments. One motor species always moves in one direction, e.g. conventional kinesin moves to the microtubule plus end, while cytoplasmic dynein moves…

Subcellular Processes · Quantitative Biology 2008-07-04 Melanie J. I. Müller , Stefan Klumpp , Reinhard Lipowsky

Compartmentalization into biochemically distinct organelles constantly exchanging material is one of the hallmarks of eukaryotic cells. In the most naive picture of inter-organelle transport driven by concentration gradients, concentration…

Subcellular Processes · Quantitative Biology 2015-05-27 Serge Dmitrieff , Pierre Sens

Photonic devices exhibiting all-optically reconfigurable polarization dependence with a large dynamic range would be highly attractive for active polarization control. Here, we report that strongly polarization-selective nonlinear…

Optics · Physics 2019-02-20 Dae Seok Han , Il-Min Lee , Kyung Hyun Park , Myeong Soo Kang

We discover a new type of nonequilibrium phase transition in a model of chromatin dynamics, which accounts for the coherent motions that have been observed in experiment. The coherent motion is due to the long-range cooperation of molecular…

Soft Condensed Matter · Physics 2023-07-27 Iraj Eshghi , Alexanda Zidovska , Alexander Y. Grosberg

Motile cilia beat in an asymmetric fashion in order to propel the surrounding fluid. When many cilia are located on a surface, their beating can synchronise such that their phases form metachronal waves. Here, we computationally study a…

Soft Condensed Matter · Physics 2023-09-29 David J. Hickey , Ramin Golestanian , Andrej Vilfan

Adhesion-independent migration is a prominent mode of cell motility in confined environments, yet the physical principles that guide such movement remain incompletely understood. We present a phase-field model for simulating the motility of…

We derive the equations governing the motion of Kerr solitons in pair waveforms. Recent experiments in microresonators have studied a variety of interaction effects in multisoliton waveforms, including collisions and formation of soliton…

Pattern Formation and Solitons · Physics 2025-07-11 Amir Leshem , Sanzida Akter , Logan Courtright , Pradyoth Shandilya , Curtis R. Menyuk , Omri Gat

We show that dressing polar molecules with a far-off-resonant optical field leads to new types of intermolecular potentials, which undergo a crossover from the inverse-power to oscillating behavior depending on the intermolecular distance,…

Atomic Physics · Physics 2011-06-01 Mikhail Lemeshko

In active matter systems, self-propelled particles can self-organize to undergo collective motion, leading to persistent dynamical behavior out of equilibrium. In cells, cytoskeletal filaments and motor proteins self-organize into complex…

Soft Condensed Matter · Physics 2020-05-19 Jeffrey M. Moore , Tyler N. Thompson , Matthew A. Glaser , Meredith D. Betterton

The process of polarization determines the head and tail of single cells. A mechanism of this kind frequently precedes the subsequent cell locomotion and it determines the direction of motion. The process of polarization has frequently been…

Biological Physics · Physics 2021-12-30 Eduardo Moreno , Sergio Alonso
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