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Graph Neural Networks (GNNs) have shown remarkable success across various scientific fields, yet their adoption in critical decision-making is often hindered by a lack of interpretability. Recently, intrinsically interpretable GNNs have…

Machine Learning · Computer Science 2025-10-07 Cheng Xin , Fan Xu , Xin Ding , Jie Gao , Jiaxin Ding

The rapid advancement in data-driven research has increased the demand for effective graph data analysis. However, real-world data often exhibits class imbalance, leading to poor performance of machine learning models. To overcome this…

Machine Learning · Computer Science 2023-04-11 Yihong Ma , Yijun Tian , Nuno Moniz , Nitesh V. Chawla

Topological learning is a wide research area aiming at uncovering the mutual spatial relationships between the elements of a set. Some of the most common and oldest approaches involve the use of unsupervised competitive neural networks.…

Machine Learning · Statistics 2021-11-03 Pietro Barbiero , Gabriele Ciravegna , Vincenzo Randazzo , Giansalvo Cirrincione

In this paper, we propose an end-to-end graph learning framework, namely Iterative Deep Graph Learning (IDGL), for jointly and iteratively learning graph structure and graph embedding. The key rationale of IDGL is to learn a better graph…

Machine Learning · Computer Science 2020-10-26 Yu Chen , Lingfei Wu , Mohammed J. Zaki

Textual Attributed Graphs (TAGs) are crucial for modeling complex real-world systems, yet leveraging large language models (LLMs) for TAGs presents unique challenges due to the gap between sequential text processing and graph-structured…

Machine Learning · Computer Science 2025-05-09 Zhengyu Hu , Yichuan Li , Zhengyu Chen , Jingang Wang , Han Liu , Kyumin Lee , Kaize Ding

Large Language Models (LLMs) have demonstrated strong capabilities in various natural language processing tasks; however, their application to graph-related problems remains limited, primarily due to scalability constraints and the absence…

Machine Learning · Computer Science 2025-05-08 Hyun Lee , Chris Yi , Maminur Islam , B. D. S. Aritra

Graph machine learning has gained great attention in both academia and industry recently. Most of the graph machine learning models, such as Graph Neural Networks (GNNs), are trained over massive graph data. However, in many real-world…

Machine Learning · Computer Science 2022-10-19 Xingbo Fu , Binchi Zhang , Yushun Dong , Chen Chen , Jundong Li

Multimodal Attributed Graph Learning (MAGL) integrates intrinsic node attributes with structural topology via graph aggregation. However, as pretrained encoders evolve into Large Foundation Models (LFMs), the landscape of MAGL fundamentally…

Machine Learning · Computer Science 2026-05-26 Hao Yan , Xuanru Wang , Jun Yin , Shirui Pan , Senzhang Wang , Chengqi Zhang

Topological deep learning is a formalism that is aimed at introducing topological language to deep learning for the purpose of utilizing the minimal mathematical structures to formalize problems that arise in a generic deep learning…

Machine Learning · Computer Science 2021-02-17 Mustafa Hajij , Kyle Istvan

We present the analysis of the topological graph descriptor Local Degree Profile (LDP), which forms a widely used structural baseline for graph classification. Our study focuses on model evaluation in the context of the recently developed…

Machine Learning · Computer Science 2023-05-02 Jakub Adamczyk , Wojciech Czech

The rising interest in leveraging higher-order interactions present in complex systems has led to a surge in more expressive models exploiting higher-order structures in the data, especially in topological deep learning (TDL), which designs…

The adaptive processing of graph data is a long-standing research topic which has been lately consolidated as a theme of major interest in the deep learning community. The snap increase in the amount and breadth of related research has come…

Machine Learning · Computer Science 2020-06-16 Davide Bacciu , Federico Errica , Alessio Micheli , Marco Podda

In order to efficiently learn with small amount of data on new tasks, meta-learning transfers knowledge learned from previous tasks to the new ones. However, a critical challenge in meta-learning is the task heterogeneity which cannot be…

Machine Learning · Computer Science 2020-01-06 Huaxiu Yao , Xian Wu , Zhiqiang Tao , Yaliang Li , Bolin Ding , Ruirui Li , Zhenhui Li

In data-parallel optimization of machine learning models, workers collaborate to improve their estimates of the model: more accurate gradients allow them to use larger learning rates and optimize faster. In the decentralized setting, in…

Machine Learning · Computer Science 2023-01-06 Thijs Vogels , Hadrien Hendrikx , Martin Jaggi

Improving the general capabilities of large language models (LLMs) is an active research topic. As a common data structure in many real-world domains, understanding graph data is a crucial part of advancing general intelligence. To this…

Artificial Intelligence · Computer Science 2025-11-19 Zihan Luo , Xiran Song , Hong Huang , Jianxun Lian , Chenhao Zhang , Jinqi Jiang , Xing Xie , Hai Jin

Deep learning methods have achieved impressive performance for multi-class medical image segmentation. However, they are limited in their ability to encode topological interactions among different classes (e.g., containment and exclusion).…

Automatically detecting/segmenting object(s) that blend in with their surroundings is difficult for current models. A major challenge is that the intrinsic similarities between such foreground objects and background surroundings make the…

Computer Vision and Pattern Recognition · Computer Science 2021-04-07 Qiang Zhai , Xin Li , Fan Yang , Chenglizhao Chen , Hong Cheng , Deng-Ping Fan

Recent years have seen a rapid growth of utilizing graph neural networks (GNNs) in the biomedical domain for tackling drug-related problems. However, like any other deep architectures, GNNs are data hungry. While requiring labels in real…

Biological Physics · Physics 2022-05-03 Mengying Sun , Jing Xing , Huijun Wang , Bin Chen , Jiayu Zhou

Graph representation learning has emerged as a powerful tool for preserving graph topology when mapping nodes to vector representations, enabling various downstream tasks such as node classification and community detection. However, most…

Machine Learning · Computer Science 2025-03-21 Kaizhe Fan , Quanjun Li

While Large Language Models (LLMs) have shown exceptional generalization capabilities, their ability to process graph data, such as molecular structures, remains limited. To bridge this gap, this paper proposes Graph2Token, an efficient…

Machine Learning · Computer Science 2025-03-11 Runze Wang , Mingqi Yang , Yanming Shen