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Single-cell RNA sequencing (scRNA-seq) is widely used to reveal heterogeneity in cells, which has given us insights into cell-cell communication, cell differentiation, and differential gene expression. However, analyzing scRNA-seq data is a…

Machine Learning · Computer Science 2023-06-27 Yuta Hozumi , Gu-Wei Wei

We are in the era where the Big Data analytics has changed the way of interpreting the various biomedical phenomena, and as the generated data increase, the need for new machine learning methods to handle this evolution grows. An indicative…

Machine Learning · Computer Science 2020-12-04 Panagiotis Anagnostou , Petros T. Barmbas , Aristidis G. Vrahatis , Sotiris K. Tasoulis

Automated detection of cervical cancer cells or cell clumps has the potential to significantly reduce error rate and increase productivity in cervical cancer screening. However, most traditional methods rely on the success of accurate cell…

Computer Vision and Pattern Recognition · Computer Science 2019-12-24 Yixiong Liang , Zhihong Tang , Meng Yan , Jialin Chen , Qing Liu , Yao Xiang

Most dimensionality reduction methods employ frequency domain representations obtained from matrix diagonalization and may not be efficient for large datasets with relatively high intrinsic dimensions. To address this challenge, Correlated…

Machine Learning · Statistics 2022-06-10 Yuta Hozumi , Rui Wang , Guo-Wei Wei

The popularity of Artificial intelligence and machine learning have prompted researchers to use it in the recent researches. The proposed method uses K-Nearest Neighbor (KNN) algorithm for segmentation of medical images, extracting of image…

Image and Video Processing · Electrical Eng. & Systems 2023-03-17 Ayesha Heena , Nagashettappa Biradar , Najmuddin M. Maroof , Surbhi Bhatia , Rashmi Agarwal , Kanta Prasad

Nearest neighbor is a popular class of classification methods with many desirable properties. For a large data set which cannot be loaded into the memory of a single machine due to computation, communication, privacy, or ownership…

Machine Learning · Statistics 2019-11-01 Xingye Qiao , Jiexin Duan , Guang Cheng

In the field of biological research, it is essential to comprehend the characteristics and functions of molecular sequences. The classification of molecular sequences has seen widespread use of neural network-based techniques. Despite their…

Machine Learning · Computer Science 2024-02-14 Sarwan Ali , Tamkanat E Ali , Prakash Chourasia , Murray Patterson

Motivation: Drug discovery demands rapid quantification of compound-protein interaction (CPI). However, there is a lack of methods that can predict compound-protein affinity from sequences alone with high applicability, accuracy, and…

Biomolecules · Quantitative Biology 2020-12-17 Mostafa Karimi , Di Wu , Zhangyang Wang , Yang Shen

Convolutional neural networks (CNNs) are widely used for image recognition and text analysis, and have been suggested for application on one-dimensional data as a way to reduce the need for pre-processing steps. Pre-processing is an…

Machine Learning · Computer Science 2020-05-18 Ine L. Jernelv , Dag Roar Hjelme , Yuji Matsuura , Astrid Aksnes

The k-Nearest Neighbor (k-NN) classification algorithm is one of the most widely-used lazy classifiers because of its simplicity and ease of implementation. It is considered to be an effective classifier and has many applications. However,…

Machine Learning · Computer Science 2014-02-13 Stefanos Ougiaroglou , Georgios Evangelidis , Dimitris A. Dervos

With the advent of convolutional neural networks~(CNN), supervised learning methods are increasingly being used for whole brain segmentation. However, a large, manually annotated training dataset of labeled brain images required to train…

Computer Vision and Pattern Recognition · Computer Science 2019-03-05 Amod Jog , Andrew Hoopes , Douglas N. Greve , Koen Van Leemput , Bruce Fischl

Protein structure prediction is one of the most important problems in computational biology. The most successful computational approach, also called template-based modeling, identifies templates with solved crystal structures for the query…

Biomolecules · Quantitative Biology 2013-06-20 Jian Peng

Treatment effect estimation is of high-importance for both researchers and practitioners across many scientific and industrial domains. The abundance of observational data makes them increasingly used by researchers for the estimation of…

Machine Learning · Statistics 2023-06-22 Niki Kiriakidou , Christos Diou

Given a training set $P$ of labeled points, the nearest-neighbor rule predicts the class of an unlabeled query point as the label of its closest point in the set. To improve the time and space complexity of classification, a natural…

Computational Geometry · Computer Science 2020-07-24 Alejandro Flores-Velazco , David M. Mount

This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a technique to reduce the number of comparison needed to find…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-08-29 Stuart Byma , Akash Dhasade , Adrian Altenhoff , Christophe Dessimoz , James R. Larus

Malaria is a deadly disease which claims the lives of hundreds of thousands of people every year. Computational methods have been proven to be useful in the medical industry by providing effective means of classification of diagnostic…

Computer Vision and Pattern Recognition · Computer Science 2020-05-26 Rishabh Malhotra , Dhron Joshi , Ku Young Shin

This research presents a machine-learning approach for tumor detection in medical images using convolutional neural networks (CNNs). The study focuses on preprocessing techniques to enhance image features relevant to tumor detection,…

Image and Video Processing · Electrical Eng. & Systems 2024-03-01 Ha Anh Vu

Nowadays, face recognition and more generally image recognition have many applications in the modern world and are widely used in our daily tasks. This paper aims to propose a distributed approximate nearest neighbor (ANN) method for…

Computer Vision and Pattern Recognition · Computer Science 2020-08-31 Aysan Aghazadeh , Maryam Amirmazlaghani

Molecular property prediction (MPP) is a fundamental but challenging task in the computer-aided drug discovery process. More and more recent works employ different graph-based models for MPP, which have made considerable progress in…

Machine Learning · Computer Science 2023-12-29 Bangyi Zhao , Weixia Xu , Jihong Guan , Shuigeng Zhou

The article deals with the issue of modification of metric classification algorithms. In particular, it studies the algorithm k-Nearest Neighbours for its application to sequential data. A method of generalization of metric classification…

Machine Learning · Computer Science 2016-12-19 Roman Samarev , Andrey Vasnetsov , Elizaveta Smelkova
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