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Related papers: Dissipative self-assembly of patchy particles unde…

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We combine computer simulations and analytical theory to investigate the glassy dynamics in dense assemblies of athermal particles evolving under the sole influence of self-propulsion. The simulations reveal that when the persistence time…

Soft Condensed Matter · Physics 2015-06-30 Grzegorz Szamel , Elijah Flenner , Ludovic Berthier

Self-assembly is a ubiquitous process in synthetic and biological systems, broadly defined as the spontaneous organization of multiple subunits (e.g. macromolecules, particles) into ordered multi-unit structures. The vast majority of…

Soft Condensed Matter · Physics 2023-08-08 Michael F. Hagan , Gregory M. Grason

Assembly of protein complexes like virus shells, the centriole, the nuclear pore complex or the actin cytoskeleton is strongly determined by their spatial structure. Moreover it is becoming increasingly clear that the reversible nature of…

Subcellular Processes · Quantitative Biology 2014-05-13 Heinrich C. R. Klein , Ulrich S. Schwarz

The field of complex self-assembly is moving toward the design of multi-particle structures consisting of thousands of distinct building blocks. To exploit the potential benefits of structures with such `addressable complexity,' we need to…

Soft Condensed Matter · Physics 2015-06-02 William M. Jacobs , Aleks Reinhardt , Daan Frenkel

We develop a class of models with which we simulate the assembly of particles into T1 capsid-like objects using Newtonian dynamics. By simulating assembly for many different values of system parameters, we vary the forces that drive…

Biomolecules · Quantitative Biology 2009-11-11 Michael F. Hagan , David Chandler

Dissipative self-assembly is a recently proposed concept in the field of non-equilibrium systems. This concept catches the reader's attention owing to its relationship with life phenomena. Recently, Credi's group has reported the behavior…

Chemical Physics · Physics 2022-12-01 Yoshiyuki Kageyama , Goro Maruta

We combine particle-based simulations, mean-field rate equations, and Wertheim's theory to study the dynamics of patchy particles in and out of equilibrium, at different temperatures and densities. We consider an initial random distribution…

Soft Condensed Matter · Physics 2017-11-01 J. M. Tavares , C. S. Dias , N. A. M. Araújo , M. M. Telo da Gama

Biological assemblies such as chromosomes, membranes, and the cytoskeleton are driven out of equilibrium at the nanoscale by enzymatic activity and molecular motors. Similar non-equilibrium dynamics can be realized in synthetic systems,…

Biological Physics · Physics 2020-06-04 Federica Mura , Grzegorz Gradziuk , Chase P. Broedersz

In the self-assembly process which drives the formation of cellular membranes, micelles, and capsids, a collection of separated subunits spontaneously binds together to form functional and more ordered structures. In this work, we study the…

Biological Physics · Physics 2021-05-04 Mobolaji Williams

Colloidal patchy particles with divalent attractive interaction can self-assemble into linear polymer chains. Their equilibrium properties in 2D and 3D are well described by Wertheim's thermodynamic perturbation theory which predicts a…

Soft Condensed Matter · Physics 2022-09-21 H. J. Jonas , P. Schall , P. G. Bolhuis

Understanding interactions between microparticles and lipid membranes is of increasing importance, especially for unraveling the influence of microplastics on our health and environment. Here, we study how a short-ranged adhesive force…

Soft Condensed Matter · Physics 2017-10-11 Casper van der Wel , Doris Heinrich , Daniela J. Kraft

Building structures with hierarchical order through the self-assembly of smaller blocks is not only a prerogative of nature, but also a strategy to design artificial materials with tailored functions. We explore in simulation the…

Soft Condensed Matter · Physics 2020-02-17 Santi Prestipino , Domenico Gazzillo , Gianmarco Munaò , Dino Costa

Active self-assembly can bypass equilibrium bottlenecks through external energy injection. However, generic driving typically distorts target structures and requires sustained energy input even after assembly is complete. Here, we…

Soft Condensed Matter · Physics 2026-04-27 Dawid Dopierała , Luca Cocconi , Robert L. Jack , Anton Souslov

A coarse-grained computational model is used to investigate the effect of a fluctuating fluid membrane on the dynamics of patchy-particle assembly into virus capsid-like cores. Results from simulations for a broad range of parameters are…

Soft Condensed Matter · Physics 2014-11-18 Richard Matthews , Christos N. Likos

In this paper, we develop a thermodynamic perturbation theory to describe the self-assembly of patchy colloids which exhibit both patch-patch attractions as well as patch / non-patch attractions. That is, patches attract other patches as…

Soft Condensed Matter · Physics 2017-09-14 Bennett D. Marshall

We analyse the collective dynamics of self-propelled particles in the large density regime where passive particles undergo a kinetic arrest to an amorphous glassy state. We capture the competition between self-propulsion and crowding…

Statistical Mechanics · Physics 2014-06-11 Ludovic Berthier

We investigate the self-assembly of amphiphilic nanocubes under rest and shear using molecular dynamics (MD) simulations and kinetic Monte Carlo (KMC) calculations. These particles combine both interaction and shape anisotropy, making them…

Soft Condensed Matter · Physics 2023-05-24 Takahiro Yokoyama , Yusei Kobayashi , Noriyoshi Arai , Arash Nikoubashman

Effective colloid-colloid interactions can be tailored through the addition of a complex cosolute. Here we investigate the case of a cosolute made by self-assembling patchy particles. Depending on the valence, these particles can form…

Soft Condensed Matter · Physics 2019-02-08 Nicolás Ariel García , Nicoletta Gnan , Emanuela Zaccarelli

Non-equilibrium assembly, driven by fluxes controllable by continuous external energy inputs, enables dynamic and reconfigurable structures. Such controlled 3D assembly is desired for the design of adaptive materials that exploit…

Soft Condensed Matter · Physics 2024-12-17 Desmond J. Quinn , Diptabrata Paul , Frank Cichos

Because of consuming energy to drive their motion, systems of active colloids are intrinsically out of equilibrium. In the past decade, a variety of intriguing dynamic patterns have been observed in systems of active colloids, and they…

Soft Condensed Matter · Physics 2020-04-16 Zhan Ma , Mingcheng Yang , Ran Ni