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The sharing of external data has become a strong demand of financial institutions, but the privacy issue has led to the difficulty of interconnecting different platforms and the low degree of data openness. To effectively solve the privacy…

Machine Learning · Computer Science 2025-05-02 Zhizhong Tan , Jiexin Zheng , Kevin Qi Zhang , Wenyong Wang

Molecular relational learning, whose goal is to learn the interaction behavior between molecular pairs, got a surge of interest in molecular sciences due to its wide range of applications. Recently, graph neural networks have recently shown…

Molecular Networks · Quantitative Biology 2023-07-11 Namkyeong Lee , Dongmin Hyun , Gyoung S. Na , Sungwon Kim , Junseok Lee , Chanyoung Park

Graph neural networks (GNNs) have delivered remarkable results in various fields. However, the rapid increase in the scale of graph data has introduced significant performance bottlenecks for GNN inference. Both computational complexity and…

Machine Learning · Computer Science 2025-03-11 Xiabao Wu , Yongchao Liu , Wei Qin , Chuntao Hong

Graph representation learning on vast datasets, like web data, has made significant strides. However, the associated computational and storage overheads raise concerns. In sight of this, Graph condensation (GCond) has been introduced to…

Machine Learning · Computer Science 2024-02-12 Junfeng Fang , Xinglin Li , Yongduo Sui , Yuan Gao , Guibin Zhang , Kun Wang , Xiang Wang , Xiangnan He

Graph Neural Networks (GNNs) are powerful models that can manage complex data sources and their interconnection links. One of GNNs' main drawbacks is their lack of interpretability, which limits their application in sensitive fields. In…

Machine Learning · Computer Science 2026-03-24 Salvatore Calderaro , Domenico Amato , Giosuè Lo Bosco , Riccardo Rizzo , Filippo Vella

In the field of deep learning, Graph Neural Networks (GNNs) and Graph Transformer models, with their outstanding performance and flexible architectural designs, have become leading technologies for processing structured data, especially…

Machine Learning · Computer Science 2025-02-04 Jiawei E , Yinglong Zhang , Xuewen Xia , Xing Xu

Existing Graph Neural Networks (GNNs) are limited to process graphs each of whose vertices is represented by a vector or a single value, limited their representing capability to describe complex objects. In this paper, we propose the first…

Machine Learning · Computer Science 2024-07-02 Jiongshu Wang , Jing Yang , Jiankang Deng , Hatice Gunes , Siyang Song

Graphs are a ubiquitous data structure to model processes and relations in a wide range of domains. Examples include control-flow graphs in programs and semantic scene graphs in images. Identifying subgraph patterns in graphs is an…

Machine Learning · Computer Science 2022-02-22 Huan Song , Zeng Dai , Panpan Xu , Liu Ren

Graph representation learning has shown superior performance in numerous real-world applications, such as finance and social networks. Nevertheless, most existing works might make discriminatory predictions due to insufficient attention to…

Machine Learning · Computer Science 2024-09-05 Ziyi Zhang , Mingxuan Ouyang , Wanyu Lin , Hao Lan , Lei Yang

Graph Visualization, also known as Graph Drawing, aims to find geometric embeddings of graphs that optimize certain criteria. Stress is a widely used metric; stress is minimized when every pair of nodes is positioned at their shortest path…

Computational Geometry · Computer Science 2024-02-13 Florian Grötschla , Joël Mathys , Robert Veres , Roger Wattenhofer

We present distributed algorithms for training dynamic Graph Neural Networks (GNN) on large scale graphs spanning multi-node, multi-GPU systems. To the best of our knowledge, this is the first scaling study on dynamic GNN. We devise…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-17 Venkatesan T. Chakaravarthy , Shivmaran S. Pandian , Saurabh Raje , Yogish Sabharwal , Toyotaro Suzumura , Shashanka Ubaru

Graph Neural Networks (GNNs) have been widely adopted for their ability to compute expressive node representations in graph datasets. However, serving GNNs on large graphs is challenging due to the high communication, computation, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-16 Geon-Woo Kim , Donghyun Kim , Jeongyoon Moon , Henry Liu , Tarannum Khan , Anand Iyer , Daehyeok Kim , Aditya Akella

Message passing plays a vital role in graph neural networks (GNNs) for effective feature learning. However, the over-reliance on input topology diminishes the efficacy of message passing and restricts the ability of GNNs. Despite efforts to…

Machine Learning · Computer Science 2024-12-03 Junshu Sun , Chenxue Yang , Xiangyang Ji , Qingming Huang , Shuhui Wang

Graph Neural Networks (GNNs) are routinely used in molecular physics, social sciences, and economics to model many-body interactions in graph-like systems. However, GNNs are inherently local and can suffer from information flow bottlenecks.…

Computational Physics · Physics 2025-02-21 Alessandro Caruso , Jacopo Venturin , Lorenzo Giambagli , Edoardo Rolando , Frank Noé , Cecilia Clementi

Graphs consisting of vocal nodes ("the vocal minority") and silent nodes ("the silent majority"), namely VS-Graph, are ubiquitous in the real world. The vocal nodes tend to have abundant features and labels. In contrast, silent nodes only…

Machine Learning · Computer Science 2023-04-11 Wendong Bi , Bingbing Xu , Xiaoqian Sun , Li Xu , Huawei Shen , Xueqi Cheng

Knowledge Graphs (KGs) are a rich source of structured, heterogeneous data, powering a wide range of applications. A common approach to leverage this data is to train a graph neural network (GNN) on the KG. However, existing message-passing…

Machine Learning · Computer Science 2025-12-10 Humera Sabir , Fatima Farooq , Ashraf Aboulnaga

Training Graph Neural Networks (GNNs) on real-world graphs consisting of billions of nodes and edges is quite challenging, primarily due to the substantial memory needed to store the graph and its intermediate node and edge features, and…

Machine Learning · Computer Science 2023-08-08 Kaidi Cao , Rui Deng , Shirley Wu , Edward W Huang , Karthik Subbian , Jure Leskovec

Deep learning-based approaches have been developed to solve challenging problems in wireless communications, leading to promising results. Early attempts adopted neural network architectures inherited from applications such as computer…

Information Theory · Computer Science 2022-11-07 Yifei Shen , Jun Zhang , S. H. Song , Khaled B. Letaief

Graph neural networks have demonstrated state-of-the-art performance on knowledge graph tasks such as link prediction. However, interpreting GNN predictions remains a challenging open problem. While many GNN explainability methods have been…

Machine Learning · Computer Science 2025-06-17 Ryoji Kubo , Djellel Difallah

Knowledge graph (KG) question generation (QG) aims to generate natural language questions from KGs and target answers. Previous works mostly focus on a simple setting which is to generate questions from a single KG triple. In this work, we…

Computation and Language · Computer Science 2023-05-02 Yu Chen , Lingfei Wu , Mohammed J. Zaki
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