Related papers: Pre-training data selection for biomedical domain …

Recent developments in Natural Language Processing have led to the introduction of state-of-the-art Neural Language Models, enabled with unsupervised transferable learning, using different pretraining objectives. While these models achieve…

Pathology text mining is a challenging task given the reporting variability and constant new findings in cancer sub-type definitions. However, successful text mining of a large pathology database can play a critical role to advance 'big…

Every data selection method inherently has a target. In practice, these targets often emerge implicitly through benchmark-driven iteration: researchers develop selection strategies, train models, measure benchmark performance, then refine…

Language model (LM) pretraining can learn various knowledge from text corpora, helping downstream tasks. However, existing methods such as BERT model a single document, and do not capture dependencies or knowledge that span across…

Language model pre-training has proven to be useful in many language understanding tasks. In this paper, we investigate whether it is still helpful to add the self-training method in the pre-training step and the fine-tuning step. Towards…

Natural language processing (NLP) in the medical domain can underperform in real-world applications involving small datasets in a non-English language with few labeled samples and imbalanced classes. There is yet no consensus on how to…

Pretrained language models (PLMs) are trained on massive corpora, but often need to specialize to specific domains. A parameter-efficient adaptation method suggests training an adapter for each domain on the task of language modeling. This…

We systematically investigate lightweight strategies to adapt large language models (LLMs) for the task of radiology report summarization (RRS). Specifically, we focus on domain adaptation via pretraining (on natural language, biomedical…

This paper presents a pipeline for mitigating gender bias in large language models (LLMs) used in medical literature by neutralizing gendered occupational pronouns. A dataset of 379,000 PubMed abstracts from 1965-1980 was processed to…

We focus on multi-turn response selection in a retrieval-based dialog system. In this paper, we utilize the powerful pre-trained language model Bi-directional Encoder Representations from Transformer (BERT) for a multi-turn dialog system…

Pretraining DNA language models (DNALMs) on the full human genome is resource-intensive, yet often considered necessary for strong downstream performance. Inspired by recent findings in NLP and long-context modeling, we explore an…

Deep learning-based Natural Language Processing methods, especially transformers, have achieved impressive performance in the last few years. Applying those state-of-the-art NLP methods to legal activities to automate or simplify some…

Pretraining datasets for large language models (LLMs) have grown to trillions of tokens composed of large amounts of CommonCrawl (CC) web scrape along with smaller, domain-specific datasets. It is expensive to understand the impact of these…

Contextualized word embeddings such as ELMo and BERT provide a foundation for strong performance across a wide range of natural language processing tasks by pretraining on large corpora of unlabeled text. However, the applicability of this…

In this paper, we present our approach to extracting structured information from unstructured Electronic Health Records (EHR) [2] which can be used to, for example, study adverse drug reactions in patients due to chemicals in their…

Recent advances in NLP are brought by a range of large-scale pretrained language models (PLMs). These PLMs have brought significant performance gains for a range of NLP tasks, circumventing the need to customize complex designs for specific…

Transformer-based pre-trained language models have significantly improved the performance of various natural language processing (NLP) tasks in the recent years. While effective and prevalent, these models are usually prohibitively large…

We propose a novel parameter-efficient training (PET) method for large language models that adapts models to downstream tasks by optimizing a small subset of the existing model parameters. Unlike prior methods, this subset is not fixed in…

Deep neural language models have set new breakthroughs in many tasks of Natural Language Processing (NLP). Recent work has shown that deep transformer language models (pretrained on large amounts of texts) can achieve high levels of…

Pre-trained Large Language Models (LLMs) often struggle on out-of-domain datasets like healthcare focused text. We explore specialized pre-training to adapt smaller LLMs to different healthcare datasets. Three methods are assessed:…