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Colorectal cancer (CRC) ranks as the second leading cause of cancer-related deaths and the third most prevalent malignant tumour worldwide. Early detection of CRC remains problematic due to its non-specific and often embarrassing symptoms,…

Machine Learning · Computer Science 2025-04-25 Natalia Sikora , Robert L. Manschke , Alethea M. Tang , Peter Dunstan , Dean A. Harris , Su Yang

Recurrence risk estimation in clear cell renal cell carcinoma (ccRCC) is essential for guiding postoperative surveillance and treatment. The Leibovich score remains widely used for stratifying distant recurrence risk but offers limited…

Given that biochemical circuits can process information by using analog computation, a question is: What can biochemical circuits compute? This paper considers the problem of using biochemical circuits to distinguish persistent signals from…

Molecular Networks · Quantitative Biology 2021-09-20 Chun Tung Chou

Biomarker measurements obtained by blood sampling are often used as a non-invasive means of monitoring tumour progression in cancer patients. Diseases evolve dynamically over time, and studying longitudinal observations of specific…

Applications · Statistics 2025-03-14 Alice Cleynen , Benoîte de Saporta , Amélie Vernay

Colorectal liver metastases (CLM) significantly impact colon cancer patients, influencing survival based on systemic chemotherapy response. Traditional methods like tumor grading scores (e.g., tumor regression grade - TRG) for prognosis…

Surgical resection is the primary treatment option for brain tumor patients, but it carries the risk of postoperative cognitive impairments. This study investigates how tumor-induced alterations in presurgical neural dynamics relate to…

Signal Processing · Electrical Eng. & Systems 2026-05-05 Triet M. Tran , Sina Khanmohammadi

In clinical trials, patients may discontinue treatments prematurely, breaking the initial randomization and, thus, challenging inference. Stakeholders in drug development are generally interested in going beyond the Intention-To-Treat (ITT)…

We consider the Top-$K$ selection problem, which aims to identify the largest $K$ elements in an array. Top-$K$ selection arises in many machine learning algorithms and often becomes a bottleneck on accelerators, which are optimized for…

Machine Learning · Computer Science 2026-05-14 Yashas Samaga , Varun Yerram , Spandana Raj Babbula , Prateek Jain , Praneeth Netrapalli

Cervical cancer remains the fourth most common malignancy amongst women worldwide.1 Concurrent chemoradiotherapy (CRT) serves as the mainstay definitive treatment regimen for locally advanced cervical cancers and includes external beam…

Computer Vision and Pattern Recognition · Computer Science 2025-02-14 Awj Twam , Adrian E. Celaya , Megan C. Jacobsen , Rachel Glenn , Peng Wei , Jia Sun , Ann Klopp , Aradhana M. Venkatesan , David Fuentes

In this study we assessed the repeatability of the values of radiomics features for small prostate tumors using test-retest Multiparametric Magnetic Resonance Imaging (mpMRI) images. The premise of radiomics is that quantitative image…

Computer Vision and Pattern Recognition · Computer Science 2018-11-16 Michael Schwier , Joost van Griethuysen , Mark G Vangel , Steve Pieper , Sharon Peled , Clare M Tempany , Hugo JWL Aerts , Ron Kikinis , Fiona M Fennessy , Andrey Fedorov

Recent advances in large language models (LLMs), such as OpenAI-o1 and DeepSeek-R1, have demonstrated the effectiveness of test-time scaling, where extended reasoning processes substantially enhance model performance. Despite this, current…

Computation and Language · Computer Science 2025-03-26 Xiaoyu Tian , Sitong Zhao , Haotian Wang , Shuaiting Chen , Yunjie Ji , Yiping Peng , Han Zhao , Xiangang Li

Non-muscle-invasive bladder cancer (NMIBC) is a relentless challenge in oncology, with recurrence rates soaring as high as 70-80%. Each recurrence triggers a cascade of invasive procedures, lifelong surveillance, and escalating healthcare…

Machine Learning · Computer Science 2025-05-02 Saram Abbas , Naeem Soomro , Rishad Shafik , Rakesh Heer , Kabita Adhikari

The objectives of this "perspective" paper are to review some recent advances in sparse feature selection for regression and classification, as well as compressed sensing, and to discuss how these might be used to develop tools to advance…

Quantitative Methods · Quantitative Biology 2015-06-18 Mathukumalli Vidyasagar

We propose a fast beam orientation selection method, based on deep neural networks (DNN), capable of developing a plan comparable to those by the state-of-the-art column generation method. The novelty of Our model lies in its supervised…

Medical Physics · Physics 2019-12-23 Azar Sadeghnejad Barkousaraie , Olalekan Ogunmolu , Steve Jiang , Dan Nguyen

Stroke is the second most frequent cause of death world wide with an annual mortality of around 5.5 million. Recurrence rates of stroke are between 5 and 25% in the first year. As mortality rates for relapses are extraordinarily high (40%)…

For Head and Neck Cancers (HNC) patient management, automatic gross tumor volume (GTV) segmentation and accurate pre-treatment cancer recurrence prediction are of great importance to assist physicians in designing personalized management…

Computer Vision and Pattern Recognition · Computer Science 2022-09-26 Kai Wang , Yunxiang Li , Michael Dohopolski , Tao Peng , Weiguo Lu , You Zhang , Jing Wang

Survival prediction is an important branch of cancer prognosis analysis. The model that predicts survival risk through TCGA genomics data can discover genes related to cancer and provide diagnosis and treatment recommendations based on…

Machine Learning · Computer Science 2024-05-14 Wankang Zhai

Complex data features, such as unmodelled censored event times and variables with time-dependent effects, are common in cancer recurrence studies and pose challenges for Bayesian survival modelling. Current methodologies for predictive…

Methodology · Statistics 2026-01-12 Saku Suorsa , Aki Vehtari

High radiation dose in computed tomography (CT) scans increases the lifetime risk of cancer, which become a major clinical concern. The backprojection-filtration (BPF) algorithm could reduce radiation dose by reconstructing images from…

Medical Physics · Physics 2013-11-20 Yan Bin , Deng Lin , Han Yu , Zhang Feng , Wang Xian Chao , Li Lei

Large Reasoning Models (LRMs) allocate substantial inference-time compute to Chain-of-Thought (CoT) reasoning, improving performance on mathematics, scientific QA, and tool usage. However, this introduces overthinking: LRMs often reach a…

Computation and Language · Computer Science 2026-04-21 Sangjun Song , Minjae Oh , Seungkyu Lee , Sungmin Jo , Yohan Jo