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This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a technique to reduce the number of comparison needed to find…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-08-29 Stuart Byma , Akash Dhasade , Adrian Altenhoff , Christophe Dessimoz , James R. Larus

Combining data has become an indispensable tool for managing the current diversity and abundance of data. But, as data complexity and data volume swell, the computational demands of previously proposed models for combining data escalate…

Methodology · Statistics 2024-06-13 Mario Figueira , David Conesa , Antonio López-Quílez , Iosu Paradinas

Performance of clustering algorithms is evaluated with the help of accuracy metrics. There is a great diversity of clustering algorithms, which are key components of many data analysis and exploration systems. However, there exist only few…

Data Structures and Algorithms · Computer Science 2019-02-18 Artem Lutov , Mourad Khayati , Philippe Cudré-Mauroux

The problem of clustering large complex networks plays a key role in several scientific fields ranging from Biology to Sociology and Computer Science. Many approaches to clustering complex networks are based on the idea of maximizing a…

Social and Information Networks · Computer Science 2013-10-17 Pasquale De Meo , Emilio Ferrara , Giacomo Fiumara , Alessandro Provetti

Modern online mass spectrometry generates multi-terabyte data streams critical for understanding Earth's environmental systems. However, extracting actionable chemical insights from these repositories is impeded by a computational…

Machine Learning · Computer Science 2026-05-11 Shao Shi , Xin Yang , Huiran Feng , Jianhuai Ye , Tianlong Hu , Yaling Zeng , Tzung-May Fu , Lei Zhu , Huizhong Shen , Chen Wang , Shu Tao

Given entities and their interactions in the web data, which may have occurred at different time, how can we find communities of entities and track their evolution? In this paper, we approach this important task from graph clustering…

Social and Information Networks · Computer Science 2023-03-29 Namyong Park , Ryan Rossi , Eunyee Koh , Iftikhar Ahamath Burhanuddin , Sungchul Kim , Fan Du , Nesreen Ahmed , Christos Faloutsos

The Gaussian mixture model (GMM) provides a simple yet principled framework for clustering, with properties suitable for statistical inference. In this paper, we propose a new model-based clustering algorithm, called EGMM (evidential GMM),…

Machine Learning · Computer Science 2022-11-29 Lianmeng Jiao , Thierry Denoeux , Zhun-ga Liu , Quan Pan

We present an analysis for the performance of decentralized consensus-based gradient (DCG) methods for solving optimization problems over a cluster network of nodes. This type of network is composed of a number of densely connected clusters…

Optimization and Control · Mathematics 2022-09-14 Amit Dutta , Nila Masrourisaadat , Thinh T. Doan

High demands for industrial networks lead to increasingly large sensor networks. However, the complexity of networks and demands for accurate data require better stability and communication quality. Conventional clustering methods for…

Signal Processing · Electrical Eng. & Systems 2021-08-10 Shufan Huang , Yongpeng Wu , Siyuan Gao

In this paper, we consider consensus problems over a network of nodes, where the network is divided into a number of clusters. We are interested in the case where the communication topology within each cluster is dense as compared to the…

Systems and Control · Electrical Eng. & Systems 2021-08-27 Thiem V. Pham , Thinh T. Doan , Dinh Hoa Nguyen

We study the problem of applying spectral clustering to cluster multi-scale data, which is data whose clusters are of various sizes and densities. Traditional spectral clustering techniques discover clusters by processing a similarity…

Machine Learning · Computer Science 2020-06-09 Xiang Li , Ben Kao , Caihua Shan , Dawei Yin , Martin Ester

Clustering algorithms are fundamental tools across many fields, with density-based methods offering particular advantages in identifying arbitrarily shaped clusters and handling noise. However, their effectiveness is often limited by the…

Machine Learning · Computer Science 2025-12-01 Meysam Shirdel Bilehsavar , Razieh Ghaedi , Samira Seyed Taheri , Xinqi Fan , Christian O'Reilly

Ensemble learning is gaining renewed interests in recent years. This paper presents EnsembleBench, a holistic framework for evaluating and recommending high diversity and high accuracy ensembles. The design of EnsembleBench offers three…

Machine Learning · Computer Science 2020-10-22 Yanzhao Wu , Ling Liu , Zhongwei Xie , Juhyun Bae , Ka-Ho Chow , Wenqi Wei

A network is a composition of many communities, i.e., sets of nodes and edges with stronger relationships, with distinct and overlapping properties. Community detection is crucial for various reasons, such as serving as a functional unit of…

Machine Learning · Computer Science 2021-01-19 Isa Inuwa-Dutse , Mark Liptrott , Yannis Korkontzelos

We present a new fast online clustering algorithm that reliably recovers arbitrary-shaped data clusters in high throughout data streams. Unlike the existing state-of-the-art online clustering methods based on k-means or k-medoid, it does…

Artificial Intelligence · Computer Science 2015-06-11 Krzysztof Choromanski , Sanjiv Kumar , Xiaofeng Liu

When scholars suspect units are dependent on each other within clusters but independent of each other across clusters, they employ cluster-robust standard errors (CRSEs). Nevertheless, what to cluster over is sometimes unknown. For…

Methodology · Statistics 2025-11-12 Kentaro Fukumoto

Fast and reliable state estimation and tracking are essential for real-time situation awareness in Cyber-Physical Systems (CPS) operating in tactical environments or complicated civilian environments. Traditional centralized solutions do…

Machine Learning · Computer Science 2024-09-17 Connor Mclaughlin , Matthew Ding , Deniz Erdogmus , Lili Su

Density-based clustering aims to find groups of similar objects (i.e., clusters) in a given dataset. Applications include, e.g., process mining and anomaly detection. It comes with two user parameters ({\epsilon}, MinPts) that determine the…

Clustering is a technique for the analysis of datasets obtained by empirical studies in several disciplines with a major application for biomedical research. Essentially, clustering algorithms are executed by machines aiming at finding…

Quantitative Methods · Quantitative Biology 2024-09-30 Diego Ulisse Pizzagalli , Santiago Fernandez Gonzalez , Rolf Krause

We introduce a novel framework for uncertainty quantification in clustering that combines martingale posterior distributions with density-based clustering. Unlike classical model-based approaches, which define clusters at the latent level…

Machine Learning · Statistics 2026-04-20 Nicola Bariletto , Stephen G. Walker