English
Related papers

Related papers: The qspec Python package: A physics toolbox for la…

200 papers

The open-source PyNX toolkit [Favre-Nicolin et al (2011) arXiv:1010.2641, Mandula et al (2016)] has been extended to provide tools for coherent X-ray imaging data analysis and simulation. All calculations can be executed on graphical…

Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…

Quantitative Methods · Quantitative Biology 2024-05-06 Ajit J. Nirmal , Peter K. Sorger

qcombo is a Python package for the symbolic evaluation of commutators between general quantum many-body operators expressed in normal-ordered form using the generalized Wick theorem. The package provides an automated and systematic…

Nuclear Theory · Physics 2026-03-26 L. H. Chen , Y. Li , H. Hergert , J. M. Yao

We describe a new open-source Python-based package for high accuracy correlated electron calculations using quantum Monte Carlo (QMC) in real space: PyQMC. PyQMC implements modern versions of QMC algorithms in an accessible format, enabling…

In a continued quest to monitor subsecond surface dynamics on the atomic scale and to improve imaging resolution, a FAST module to accelerate existing scanning probe microscopy setups was previously presented. Hereby, the speedup is enabled…

Instrumentation and Detectors · Physics 2023-01-30 K. Briegel , F. Riccius , J. Filser , A. Bourgund , R. Spitzenpfeil , M. Panighel , C. Dri , B. A. J. Lechner , F. Esch

An open-source, Python-based Temporal Analysis of Products (TAP) reactor simulation and processing program is introduced. TAPsolver utilizes algorithmic differentiation for the calculation of highly accurate derivatives, which are used to…

Computational Engineering, Finance, and Science · Computer Science 2020-09-01 Adam Yonge , M. Ross Kunz , Rakesh Batchu , Zongtang Fang , Tobin Issac , Rebecca Fushimi , Andrew J. Medford

A program package, which facilitates computations in the framework of Analytic approach to QCD, is developed and described in details. The package includes the explicit expressions for relevant spectral functions calculated up to the…

High Energy Physics - Phenomenology · Physics 2014-11-20 A. V. Nesterenko , C. Simolo

The current fleet of X-ray telescopes produces a wealth of multi-dimensional data, allowing us to study sources in time, photon energy and polarization. At the same time, it has become increasingly clear that progress in our physical…

High Energy Astrophysical Phenomena · Physics 2025-12-12 Matteo Lucchini , Benjamin Ricketts , Phil Uttley , Daniela Huppenkothen

We present the open-source image processing software package PySAP (Python Sparse data Analysis Package) developed for the COmpressed Sensing for Magnetic resonance Imaging and Cosmology (COSMIC) project. This package provides a set of…

Instrumentation and Methods for Astrophysics · Physics 2020-07-03 S. Farrens , A. Grigis , L. El Gueddari , Z. Ramzi , Chaithya G. R. , S. Starck , B. Sarthou , H. Cherkaoui , P. Ciuciu , J. -L. Starck

We present an open-source computer program written in Python language for quantum measurement and related issues. In our program, quantum states and operators, including quantum gates, can be developed into a quantum-object function…

Quantum Physics · Physics 2021-03-17 Le Bin Ho , Kieu Quang Tuan , Hung Q. Nguyen

This is the manual of the first version of QEDtool, an object-oriented Python package that performs numerical quantum electrodynamics calculations, with focus on full state reconstruction in the internal degrees of freedom, correlations and…

High Energy Physics - Theory · Physics 2026-04-07 Jesse Smeets , Preslav Asenov , Alessio Serafini

TEMPO (Time-dependent Evolution of Multiple Pulse Operations) offers accessible and efficient simulations of pulse sequences in Python, using the suite of master equation solvers available in the Quantum Toolbox in Python (QuTiP). It…

Quantum Physics · Physics 2025-02-18 Jner Tzern Oon , Sonja A. Hakala , George A. Witt , Ronald Walsworth

We are on the verge of a revolutionary era in space exploration, thanks to advancements in telescopes such as the James Webb Space Telescope (\textit{JWST}). High-resolution, high signal-to-noise spectra from exoplanet and brown dwarf…

Instrumentation and Methods for Astrophysics · Physics 2024-07-25 Ehsan , Gharib-Nezhad , Natasha E. Batalha , Hamed Valizadegan , Miguel J. S. Martinho , Mahdi Habibi , Gopal Nookula

Medical image analysis plays a key role in precision medicine as it allows the clinicians to identify anatomical abnormalities and it is routinely used in clinical assessment. Data curation and pre-processing of medical images are critical…

Image and Video Processing · Electrical Eng. & Systems 2024-07-19 Sergey Primakov , Elizaveta Lavrova , Zohaib Salahuddin , Henry C Woodruff , Philippe Lambin

Machine learning solutions are very popular in the field of chemoinformatics, where they have numerous applications, such as novel drug discovery or molecular property prediction. Molecular fingerprints are algorithms commonly used for…

Quantitative Methods · Quantitative Biology 2024-04-01 Michał Szafarczyk , Piotr Ludynia , Przemysław Kukla

SPARKX is an open-source Python package developed to analyze simulation data from heavy-ion collision experiments. By offering a comprehensive suite of tools, SPARKX simplifies data analysis workflows, supports multiple formats such as…

Data Analysis, Statistics and Probability · Physics 2026-02-02 Nils Sass , Hendrik Roch , Niklas Götz , Renata Krupczak , Carl B. Rosenkvist

Space-filling experimental design techniques are commonly used in many computer modeling and simulation studies to explore the effects of inputs on outputs. This research presents raxpy, a Python package that leverages expressive annotation…

Mathematical Software · Computer Science 2025-01-08 Neil Ranly , Torrey Wagner

The (py)LIon package is a set of tools to simulate the classical trajectories of ensembles of ions in electrodynamic traps. Molecular dynamics simulations are performed using LAMMPS, an efficient and feature-rich program. (py)LIon has been…

Computational Physics · Physics 2023-07-20 E. Bentine , C. J. Foot , D. Trypogeorgos

In this work, we propose a framework in the form of a Python package, specifically designed for the analysis of Quantum Machine Learning models. This framework is based on the PennyLane simulator and facilitates the evaluation and training…

Quantum Physics · Physics 2025-09-17 Melvin Strobl , Maja Franz , Eileen Kuehn , Wolfgang Mauerer , Achim Streit

We introduce QSTToolkit, a Python library for performing quantum state tomography (QST) on optical quantum state measurement data. The toolkit integrates traditional Maximum Likelihood Estimation (MLE) with deep learning-based techniques to…

Quantum Physics · Physics 2025-03-19 George FitzGerald , Will Yeadon