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This paper provides a global picture about the deployment of networked processing services for genomic data sets. Many current research make an extensive use genomic data, which are massive and rapidly increasing over time. They are…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-09-27 Gianluca Reali , Mauro Femminella , Emilia Nunzi , Dario Valocchi

Decentralized multi-agent systems have shown promise in enabling autonomous collaboration among LLM-based agents. While AgentNet demonstrated the feasibility of fully decentralized coordination through dynamic DAG topologies, several…

Multiagent Systems · Computer Science 2025-12-02 Goutham Nalagatla

High-quality data has become increasingly important to software engineers in designing and implementing today's software, for example, as an input to machine-learning algorithms and visualisation- and analytics-based features. Open data -…

Software Engineering · Computer Science 2022-08-02 Johan Linåker , Per Runeson , Anneke Zuiderwijk , Amanda Brock

Websites are capable of learning a wide range of information about the platform on which a browser is executing. One major source of such information is the set of standardised Application Programming Interfaces (APIs) provided within the…

Cryptography and Security · Computer Science 2019-10-17 Zhaoyi Fan

Electronic Health Records (EHRs) hold immense potential for advancing healthcare, offering rich, longitudinal data that combines structured information with valuable insights from unstructured clinical notes. However, the unstructured…

Computation and Language · Computer Science 2025-01-31 Huaiyuan Ying , Hongyi Yuan , Jinsen Lu , Zitian Qu , Yang Zhao , Zhengyun Zhao , Isaac Kohane , Tianxi Cai , Sheng Yu

We present GobyWeb, a web-based system to facilitate the management and analysis of high-throughput sequencing (HTS) projects. The software provides integrated support for a broad set of HTS analyses and offers a simple plugin extension…

Quantitative Methods · Quantitative Biology 2015-06-12 Kevin C. Dorff , Nyasha Chambwe , Zachary Zeno , Rita Shaknovich , Fabien Campagne

In this paper, we propose a novel model named DemiNet (short for DEpendency-Aware Multi-Interest Network) to address the above two issues. To be specific, we first consider various dependency types between item nodes and perform…

Information Retrieval · Computer Science 2024-03-12 Yule Wang , Qiang Luo , Yue Ding , Yunzhe Li , Dong Wang , Hongbo Deng

With the reduction of sequencing costs and the pervasiveness of computing devices, genomic data collection is continually growing. However, data collection is highly fragmented and the data is still siloed across different repositories.…

Cryptography and Security · Computer Science 2022-03-14 Leonard Dervishi , Xinyue Wang , Wentao Li , Anisa Halimi , Jaideep Vaidya , Xiaoqian Jiang , Erman Ayday

Massive data exist among user local platforms that usually cannot support deep neural network (DNN) training due to computation and storage resource constraints. Cloud-based training schemes provide beneficial services but suffer from…

Machine Learning · Computer Science 2018-01-15 Meng Li , Liangzhen Lai , Naveen Suda , Vikas Chandra , David Z. Pan

With the generation of personal and medical data at several locations, medical data science faces unique challenges when working on distributed datasets. Growing data protection requirements in recent years drastically limit the use of…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-13 Maximilian Jugl , Sascha Welten , Yongli Mou , Yeliz Ucer Yediel , Oya Deniz Beyan , Ulrich Sax , Toralf Kirsten

We developed a high-performance one-stop system for large-scale genome data analysis with secure secondary use of the data by the data owner and multiple users with different levels of data access control.

Branch is a web application that provides users with no programming with the ability to interact directly with large biomedical datasets. The interaction is mediated through a collaborative graphical user interface for building and…

Applications · Statistics 2016-05-04 Karthik Gangavarapu , Vyshakh Babji , Tobias Meißner , Andrew I. Su , Benjamin M. Good

Genetic data collection has become ubiquitous, producing genetic information about health, ancestry, and social traits. However, unregulated use, especially amid evolving scientific understanding, poses serious privacy and discrimination…

Computers and Society · Computer Science 2025-06-03 Vivek Ramanan , Ria Vinod , Cole Williams , Sohini Ramachandran , Suresh Venkatasubramanian

Bioinformatics platforms have significantly changed clinical diagnostics by facilitating the analysis of genomic data, thereby advancing personalized medicine and improving patient care. This study examines the integration, usage patterns,…

Human-Computer Interaction · Computer Science 2024-09-27 Hadi Almohab , Ramzy Al-Othmany

PhisNet is a cutting-edge web application designed to detect phishing websites using advanced machine learning. It aims to help individuals and organizations identify and prevent phishing attacks through a robust AI framework. PhisNet…

Cryptography and Security · Computer Science 2024-07-09 Prashant Kumar , Kevin Antony , Deepakmoney Banga , Arshpreet Sohal

The ways of communication and social interactions are changing. Web users are becoming increasingly engaged with Online Social Networks (OSN), which has a significant impact on the relationship mechanisms between individuals and…

Social and Information Networks · Computer Science 2018-09-11 Lucas V. A. Caldas , Antonio F. L. Jacob , Simone S. C. Silva , Fernando A. R. Pontes , Fábio M. F. Lobato

Despite data's crucial role in machine learning, most existing tools and research tend to focus on systems on top of existing data rather than how to interpret and manipulate data. In this paper, we propose DataLab, a unified data-oriented…

Machine Learning · Computer Science 2022-02-28 Yang Xiao , Jinlan Fu , Weizhe Yuan , Vijay Viswanathan , Zhoumianze Liu , Yixin Liu , Graham Neubig , Pengfei Liu

Modern low-latency anonymity systems, no matter whether constructed as an overlay or implemented at the network layer, offer limited security guarantees against traffic analysis. On the other hand, high-latency anonymity systems offer…

Cryptography and Security · Computer Science 2018-02-26 Chen Chen , Daniele E. Asoni , Adrian Perrig , David Barrera , George Danezis , Carmela Troncoso

With increasing concerns over privacy in healthcare, especially for sensitive medical data, this research introduces a federated learning framework that combines local differential privacy and secure aggregation using Secure Multi-Party…

Machine Learning · Computer Science 2024-12-03 Mohamad Haj Fares , Ahmed Mohamed Saad Emam Saad

SMART is an open source web application designed to help data scientists and research teams efficiently build labeled training data sets for supervised machine learning tasks. SMART provides users with an intuitive interface for creating…

Machine Learning · Statistics 2023-06-26 Rob Chew , Michael Wenger , Caroline Kery , Jason Nance , Keith Richards , Emily Hadley , Peter Baumgartner
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