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Spatial Transcriptomics (ST) technologies provide biologists with rich insights into single-cell biology by preserving spatial context of cells. Building foundational models for ST can significantly enhance the analysis of vast and complex…

Genomics · Quantitative Biology 2025-07-24 Suyuan Zhao , Yizhen Luo , Ganbo Yang , Yan Zhong , Hao Zhou , Zaiqing Nie

Deep neural networks face several challenges in hyperspectral image classification, including high-dimensional data, sparse distribution of ground objects, and spectral redundancy, which often lead to classification overfitting and limited…

Computer Vision and Pattern Recognition · Computer Science 2025-06-12 Guandong Li , Mengxia Ye

Visual attention modeling has recently gained momentum in developing visual hierarchies provided by Convolutional Neural Networks. Despite recent successes of feedforward processing on the abstraction of concepts form raw images, the…

Computer Vision and Pattern Recognition · Computer Science 2017-08-23 Mahdi Biparva , John Tsotsos

Whole brain segmentation on structural magnetic resonance imaging (MRI) is essential for understanding neuroanatomical-functional relationships. Traditionally, multi-atlas segmentation has been regarded as the standard method for whole…

Computer Vision and Pattern Recognition · Computer Science 2019-01-09 Yunxi Xiong , Yuankai Huo , Jiachen Wang , L. Taylor Davis , Maureen McHugo , Bennett A. Landman

In this paper, we propose a novel framework, the Sampling-guided Heterogeneous Graph Neural Network (SHT-GNN), to effectively tackle the challenge of missing data imputation in longitudinal studies. Unlike traditional methods, which often…

Machine Learning · Computer Science 2024-11-08 Zhaoyang Zhang , Ziqi Chen , Qiao Liu , Jinhan Xie , Hongtu Zhu

High-resolution hyperspectral imaging plays a crucial role in various remote sensing applications, yet its acquisition often faces fundamental limitations due to hardware constraints. This paper introduces S$^{3}$RNet, a novel framework for…

Computer Vision and Pattern Recognition · Computer Science 2025-01-15 Chia-Ming Lee , Yu-Fan Lin , Li-Wei Kang , Chih-Chung Hsu

Joint registration of a stack of 2D histological sections to recover 3D structure (``3D histology reconstruction'') finds application in areas such as atlas building and validation of \emph{in vivo} imaging. Straightforward pairwise…

Image and Video Processing · Electrical Eng. & Systems 2021-12-02 Adrià Casamitjana , Marco Lorenzi , Sebastiano Ferraris , Loc Peter , Marc Modat , Allison Stevens , Bruce Fischl , Tom Vercauteren , Juan Eugenio Iglesias

Multivariate time series classification is of great importance in practical applications and is a challenging task. However, deep neural network models such as Transformers exhibit high accuracy in multivariate time series classification…

Machine Learning · Computer Science 2024-11-19 Mingsen Du , Yanxuan Wei , Yingxia Tang , Xiangwei Zheng , Shoushui Wei , Cun Ji

Spatial correlations between different ground objects are an important feature of mining land cover research. Graph Convolutional Networks (GCNs) can effectively capture such spatial feature representations and have demonstrated promising…

Computer Vision and Pattern Recognition · Computer Science 2024-04-02 Renxiang Guan , Zihao Li , Chujia Song , Guo Yu , Xianju Li , Ruyi Feng

Collecting large-scale medical datasets with fully annotated samples for training of deep networks is prohibitively expensive, especially for 3D volume data. Recent breakthroughs in self-supervised learning (SSL) offer the ability to…

Computer Vision and Pattern Recognition · Computer Science 2022-12-06 Duy M. H. Nguyen , Hoang Nguyen , Mai T. N. Truong , Tri Cao , Binh T. Nguyen , Nhat Ho , Paul Swoboda , Shadi Albarqouni , Pengtao Xie , Daniel Sonntag

Remote sensing segmentation has a wide range of applications in environmental protection, and urban change detection, etc. Despite the success of deep learning-based remote sensing segmentation methods (e.g., CNN and Transformer), they are…

Computer Vision and Pattern Recognition · Computer Science 2025-10-23 Yuntao Shou , Wei Ai , Tao Meng , Nan Yin

The quality of graph-structured data is fundamental to the success of modern graph analysis techniques such as Graph Neural Networks (GNNs). However, real-world graph data is often suboptimal, suffering from issues such as noise and…

Machine Learning · Computer Science 2026-05-19 Shen Han , Zhiyao Zhou , Jiawei Chen , Sheng Zhou , Canghong Jin , Hai Lin , Da Zhong Li , Bingde Hu , Can Wang

Synthetic lethality (SL) prediction is used to identify if the co-mutation of two genes results in cell death. The prevalent strategy is to abstract SL prediction as an edge classification task on gene nodes within SL data and achieve it…

Machine Learning · Computer Science 2023-10-18 Xusheng Zhao , Hao Liu , Qiong Dai , Hao Peng , Xu Bai , Huailiang Peng

Graph neural networks (GNNs) are designed to process data associated with graphs. They are finding an increasing range of applications; however, as with other modern machine learning techniques, their theoretical understanding is limited.…

Disordered Systems and Neural Networks · Physics 2026-02-23 O. Duranthon , L. Zdeborová

Existing learning-based surface reconstruction methods from point clouds are still facing challenges in terms of scalability and preservation of details on large-scale point clouds. In this paper, we propose the SSRNet, a novel scalable…

Computer Vision and Pattern Recognition · Computer Science 2020-04-15 Zhenxing Mi , Yiming Luo , Wenbing Tao

We propose a multiscale spatio-temporal graph neural network (MST-GNN) to predict the future 3D skeleton-based human poses in an action-category-agnostic manner. The core of MST-GNN is a multiscale spatio-temporal graph that explicitly…

Computer Vision and Pattern Recognition · Computer Science 2021-09-29 Maosen Li , Siheng Chen , Yangheng Zhao , Ya Zhang , Yanfeng Wang , Qi Tian

Multivariate time series (MTS) forecasting has a wide range of applications in both industry and academia. Recently, spatial-temporal graph neural networks (STGNNs) have gained popularity as MTS forecasting methods. However, current STGNNs…

Machine Learning · Computer Science 2025-05-20 Huiliang Zhang , Ping Nie , Lijun Sun , Benoit Boulet

Real-time understanding in video is crucial in various AI applications such as autonomous driving. This work presents a fast single-shot segmentation strategy for video scene understanding. The proposed net, called S3-Net, quickly locates…

Computer Vision and Pattern Recognition · Computer Science 2020-11-05 Yuan Cheng , Yuchao Yang , Hai-Bao Chen , Ngai Wong , Hao Yu

The problem of effectively exploiting the information multiple data sources has become a relevant but challenging research topic in remote sensing. In this paper, we propose a new approach to exploit the complementarity of two data sources:…

Computer Vision and Pattern Recognition · Computer Science 2022-04-12 Heng-Chao Li , Wen-Shuai Hu , Wei Li , Jun Li , Qian Du , Antonio Plaza

Slice Sampling has emerged as a powerful Markov Chain Monte Carlo algorithm that adapts to the characteristics of the target distribution with minimal hand-tuning. However, Slice Sampling's performance is highly sensitive to the…

Machine Learning · Statistics 2021-10-05 Minas Karamanis , Florian Beutler