English
Related papers

Related papers: HBIC: A Biclustering Algorithm for Heterogeneous D…

200 papers

Motivation: In this paper we present the latest release of EBIC, a next-generation biclustering algorithm for mining genetic data. The major contribution of this paper is adding support for big data, making it possible to efficiently run…

Genomics · Quantitative Biology 2024-09-05 Patryk Orzechowski , Jason H. Moore

Clustering of mixed-type datasets can be a particularly challenging task as it requires taking into account the associations between variables with different level of measurement, i.e., nominal, ordinal and/or interval. In some cases,…

Methodology · Statistics 2022-04-22 Odysseas Moschidis , Angelos Markos , Theodore Chadjipadelis

The problem of biclustering consists of the simultaneous clustering of rows and columns of a matrix such that each of the submatrices induced by a pair of row and column clusters is as uniform as possible. In this paper we approximate the…

Data Structures and Algorithms · Computer Science 2008-08-22 Kai Puolamäki , Sami Hanhijärvi , Gemma C. Garriga

Clustering can be used to extract insights from data or to verify some of the assumptions held by the domain experts, namely data segmentation. In the literature, few methods can be applied in clustering qualitative values using the context…

Machine Learning · Computer Science 2020-07-07 Diogo Seca , João Mendes-Moreira , Tiago Mendes-Neves , Ricardo Sousa

Traditional clustering methods are limited when dealing with huge and heterogeneous groups of gene expression data, which motivates the development of bi-clustering methods. Bi-clustering methods are used to mine bi-clusters whose subsets…

Computer Vision and Pattern Recognition · Computer Science 2020-05-13 Kaijie Xu , Witold Pedrycz , Zhiwu Li , Yinghui Quan , Weike Nie

Biclustering algorithms play a central role in the biotechnological and biomedical domains. The knowledge extracted supports the extraction of putative regulatory modules, essential to understanding diseases, aiding therapy research, and…

Databases · Computer Science 2022-12-13 Leonardo Alexandre , Rafael S. Costa , Rui Henriques

Motivation: Modelling methods that find structure in data are necessary with the current large volumes of genomic data, and there have been various efforts to find subsets of genes exhibiting consistent patterns over subsets of treatments.…

Machine Learning · Computer Science 2016-09-15 Kerstin Bunte , Eemeli Leppäaho , Inka Saarinen , Samuel Kaski

Currently, data-driven discovery in biological sciences resides in finding segmentation strategies in multivariate data that produce sensible descriptions of the data. Clustering is but one of several approaches and sometimes falls short…

Quantitative Methods · Quantitative Biology 2022-08-12 Richard Tjörnhammar

We propose two approaches for selecting variables in latent class analysis (i.e.,mixture model assuming within component independence), which is the common model-based clustering method for mixed data. The first approach consists in…

Computation · Statistics 2017-03-08 Matthieu Marbac , Mohammed Sedki

Co-clustering is a class of unsupervised data analysis techniques that extract the existing underlying dependency structure between the instances and variables of a data table as homogeneous blocks. Most of those techniques are limited to…

Machine Learning · Computer Science 2022-12-23 Aichetou Bouchareb , Marc Boullé , Fabrice Clérot , Fabrice Rossi

This article proposes a biconvex modification to convex biclustering in order to improve its performance in high-dimensional settings. In contrast to heuristics that discard a subset of noisy features a priori, our method jointly learns and…

Machine Learning · Statistics 2026-04-13 Sam Rosen , Eric C. Chi , Jason Xu

Clustering high-dimensional datasets is hard because interpoint distances become less informative in high-dimensional spaces. We present a clustering algorithm that performs nonlinear dimensionality reduction and clustering jointly. The…

Machine Learning · Computer Science 2018-03-06 Sohil Atul Shah , Vladlen Koltun

We present an approach to model-based hierarchical clustering by formulating an objective function based on a Bayesian analysis. This model organizes the data into a cluster hierarchy while specifying a complex feature-set partitioning that…

Machine Learning · Computer Science 2013-01-18 Shivakumar Vaithyanathan , Byron E Dom

Clustering aims to group unlabelled samples based on their similarities. It has become a significant tool for the analysis of high-dimensional data. However, most of the clustering methods merely generate pseudo labels and thus are unable…

Artificial Intelligence · Computer Science 2023-06-21 Tianyi Huang , Shenghui Cheng , Stan Z. Li , Zhengjun Zhang

Biclustering numerical data became a popular data-mining task in the beginning of 2000's, especially for analysing gene expression data. A bicluster reflects a strong association between a subset of objects and a subset of attributes in a…

Data Structures and Algorithms · Computer Science 2011-11-15 Mehdi Kaytoue , Sergei O. Kuznetsov , Juraj Macko , Wagner Meira , Amedeo Napoli

The paper tackles the problem of clustering multiple networks, directed or not, that do not share the same set of vertices, into groups of networks with similar topology. A statistical model-based approach based on a finite mixture of…

Statistics Theory · Mathematics 2023-11-07 Tabea Rebafka

Physical data layout is an important performance factor for modern databases. Clustering, i.e., storing similar values in proximity, can lead to performance gains in several ways. We present an automated model to determine beneficial…

Databases · Computer Science 2021-03-30 Alexander Löser

Co-clustering is a data mining technique used to extract the underlying block structure between the rows and columns of a data matrix. Many approaches have been studied and have shown their capacity to extract such structures in continuous,…

Machine Learning · Computer Science 2022-12-23 Aichetou Bouchareb , Marc Boullé , Fabrice Clérot , Fabrice Rossi

Clustering has been a major research topic in the field of machine learning, one to which Deep Learning has recently been applied with significant success. However, an aspect of clustering that is not addressed by existing deep clustering…

Computer Vision and Pattern Recognition · Computer Science 2023-04-04 Ioannis Maniadis Metaxas , Georgios Tzimiropoulos , Ioannis Patras

Bagging and boosting are proved to be the best methods of building multiple classifiers in classification combination problems. In the area of "flat clustering" problems, it is also recognized that multi-clustering methods based on boosting…

Machine Learning · Computer Science 2018-05-31 Elaheh Rashedi , Abdolreza Mirzaei