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Clinical MRI frequently acquires anisotropic volumes with high in-plane resolution and low through-plane resolution to reduce acquisition time. Multiple orientations are therefore acquired to provide complementary anatomical information.…

Image and Video Processing · Electrical Eng. & Systems 2026-03-25 Heejong Kim , Abhishek Thanki , Roel van Herten , Daniel Margolis , Mert R Sabuncu

In this paper, we propose an efficient self-supervised arbitrary-scale super-resolution (SR) framework to reconstruct isotropic magnetic resonance (MR) images from anisotropic MRI inputs without involving external training data. The…

Image and Video Processing · Electrical Eng. & Systems 2023-05-03 Haonan Zhang , Yuhan Zhang , Qing Wu , Jiangjie Wu , Zhiming Zhen , Feng Shi , Jianmin Yuan , Hongjiang Wei , Chen Liu , Yuyao Zhang

In clinical imaging, magnetic resonance (MR) image volumes are often acquired as stacks of 2D slices with decreased scan times, improved signal-to-noise ratio, and image contrasts unique to 2D MR pulse sequences. While this is sufficient…

Computer Vision and Pattern Recognition · Computer Science 2026-03-09 Samuel W. Remedios , Shuwen Wei , Shuo Han , Jinwei Zhang , Aaron Carass , Kurt G. Schilling , Dzung L. Pham , Jerry L. Prince , Blake E. Dewey

Acquiring images in high resolution is often a challenging task. Especially in the medical sector, image quality has to be balanced with acquisition time and patient comfort. To strike a compromise between scan time and quality for Magnetic…

Computer Vision and Pattern Recognition · Computer Science 2025-09-10 Maja Schlereth , Moritz Schillinger , Katharina Breininger

Clinical routine and retrospective cohorts commonly include multi-parametric Magnetic Resonance Imaging; however, they are mostly acquired in different anisotropic 2D views due to signal-to-noise-ratio and scan-time constraints. Thus…

Although high resolution isotropic 3D medical images are desired in clinical practice, their acquisition is not always feasible. Instead, lower resolution images are upsampled to higher resolution using conventional interpolation methods.…

Image and Video Processing · Electrical Eng. & Systems 2020-10-27 Jörg Sander , Bob D. de Vos , Ivana Išgum

Three-dimensional segmentation in magnetic resonance images (MRI), which reflects the true shape of the objects, is challenging since high-resolution isotropic MRIs are rare and typical MRIs are anisotropic, with the out-of-plane dimension…

Image and Video Processing · Electrical Eng. & Systems 2023-03-15 Hanxue Gu , Hongyu He , Roy Colglazier , Jordan Axelrod , Robert French , Maciej A Mazurowski

Reconstructing high-quality magnetic resonance images (MRI) from undersampled raw data is of great interest from both technical and clinical point of views. To this date, however, it is still a mathematically and computationally challenging…

Numerical Analysis · Mathematics 2021-09-01 T. Schmoderer , A. I Aviles-Rivero , V. Corona , N. Debroux , C-B. Schönlieb

Three-dimensional (3D) imaging is popular in medical applications, however, anisotropic 3D volumes with thick, low-spatial-resolution slices are often acquired to reduce scan times. Deep learning (DL) offers a solution to recover…

Computer Vision and Pattern Recognition · Computer Science 2024-02-06 Michele Pascale , Vivek Muthurangu , Javier Montalt Tordera , Heather E Fitzke , Gauraang Bhatnagar , Stuart Taylor , Jennifer Steeden

High-resolution magnetic resonance imaging (MRI) is essential in clinical diagnosis. However, its long acquisition time remains a critical issue. Parallel imaging (PI) is a common approach to reduce acquisition time by periodically skipping…

Image and Video Processing · Electrical Eng. & Systems 2025-06-10 Hao Li , Yusheng Zhou , Jianan Liu , Xiling Liu , Tao Huang , Zhihan Lyu , Weidong Cai , Wei Chen

Magnetic Resonance Imaging (MRI) represents an important diagnostic modality; however, its inherently slow acquisition process poses challenges in obtaining fully-sampled $k$-space data under motion. In the absence of fully-sampled…

Image and Video Processing · Electrical Eng. & Systems 2024-12-23 George Yiasemis , Nikita Moriakov , Clara I. Sánchez , Jan-Jakob Sonke , Jonas Teuwen

Magnetic Resonance Imaging (MRI) acquisitions require extensive scan times, limiting patient throughput and increasing susceptibility to motion artifacts. Accelerated parallel MRI techniques reduce acquisition time by undersampling k-space…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Mingi Kang

High-resolution fMRI provides a window into the brain's mesoscale organization. Yet, higher spatial resolution increases scan times, to compensate for the low signal and contrast-to-noise ratio. This work introduces a deep learning-based 3D…

Image and Video Processing · Electrical Eng. & Systems 2024-03-20 Hongwei Bran Li , Matthew S. Rosen , Shahin Nasr , Juan Eugenio Iglesias

Fluorescence microscopy images usually show severe anisotropy in axial versus lateral resolution. This hampers downstream processing, i.e. the automatic extraction of quantitative biological data. While deconvolution methods and other…

Computer Vision and Pattern Recognition · Computer Science 2017-04-06 Martin Weigert , Loic Royer , Florian Jug , Gene Myers

Neuropathological analyses benefit from spatially precise volumetric reconstructions that enhance anatomical delineation and improve morphometric accuracy. Our prior work has shown the feasibility of reconstructing 3D brain volumes from 2D…

Dynamic magnetic resonance imaging (MRI) plays an indispensable role in cardiac diagnosis. To enable fast imaging, the k-space data can be undersampled but the image reconstruction poses a great challenge of high-dimensional processing.…

Image and Video Processing · Electrical Eng. & Systems 2024-10-03 Zi Wang , Min Xiao , Yirong Zhou , Chengyan Wang , Naiming Wu , Yi Li , Yiwen Gong , Shufu Chang , Yinyin Chen , Liuhong Zhu , Jianjun Zhou , Congbo Cai , He Wang , Di Guo , Guang Yang , Xiaobo Qu

A large portion of volumetric medical data, especially magnetic resonance imaging (MRI) data, is anisotropic, as the through-plane resolution is typically much lower than the in-plane resolution. Both 3D and purely 2D deep learning-based…

Image and Video Processing · Electrical Eng. & Systems 2023-11-29 Alex Ling Yu Hung , Haoxin Zheng , Kai Zhao , Xiaoxi Du , Kaifeng Pang , Qi Miao , Steven S. Raman , Demetri Terzopoulos , Kyunghyun Sung

Magnetic resonance image (MRI) in high spatial resolution provides detailed anatomical information and is often necessary for accurate quantitative analysis. However, high spatial resolution typically comes at the expense of longer scan…

Computer Vision and Pattern Recognition · Computer Science 2018-05-30 Yuhua Chen , Yibin Xie , Zhengwei Zhou , Feng Shi , Anthony G. Christodoulou , Debiao Li

In recent years, accelerated MRI reconstruction based on deep learning has led to significant improvements in image quality with impressive results for high acceleration factors. However, from a clinical perspective image quality is only…

Image and Video Processing · Electrical Eng. & Systems 2025-07-02 Jan Nikolas Morshuis , Christian Schlarmann , Thomas Küstner , Christian F. Baumgartner , Matthias Hein

High-resolution (HR) magnetic resonance imaging (MRI) is crucial for many clinical and research applications. However, achieving it remains costly and constrained by technical trade-offs and experimental limitations. Super-resolution (SR)…

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