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The edit distance is a fundamental measure of sequence similarity, defined as the minimum number of character insertions, deletions, and substitutions needed to transform one string into the other. Given two strings of length at most $n$,…

Data Structures and Algorithms · Computer Science 2023-07-17 Tomasz Kociumaka , Anish Mukherjee , Barna Saha

We propose the neural string edit distance model for string-pair matching and string transduction based on learnable string edit distance. We modify the original expectation-maximization learned edit distance algorithm into a differentiable…

Computation and Language · Computer Science 2022-04-28 Jindřich Libovický , Alexander Fraser

Several measures exist for string similarity, including notable ones like the edit distance and the indel distance. The former measures the count of insertions, deletions, and substitutions required to transform one string into another,…

Data Structures and Algorithms · Computer Science 2024-10-15 Sudatta Bhattacharya , Sanjana Dey , Elazar Goldenberg , Michal Koucký

In many applications, it is necessary to determine the similarity of two strings. A widely-used notion of string similarity is the edit distance: the minimum number of insertions, deletions, and substitutions required to transform one…

cmp-lg · Computer Science 2008-02-03 Eric Sven Ristad , Peter N. Yianilos

The edit distance (a.k.a. the Levenshtein distance) between two strings is defined as the minimum number of insertions, deletions or substitutions of symbols needed to transform one string into another. The problem of computing the edit…

Computational Complexity · Computer Science 2017-08-17 Arturs Backurs , Piotr Indyk

The normalized edit distance is one of the distances derived from the edit distance. It is useful in some applications because it takes into account the lengths of the two strings compared. The normalized edit distance is not defined in…

Neural and Evolutionary Computing · Computer Science 2013-12-09 Muhammad Marwan Muhammad Fuad

The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants…

Data Structures and Algorithms · Computer Science 2008-07-29 Dimitris Papamichail , Georgios Papamichail

Edit distance is a fundamental measure of distance between strings and has been widely studied in computer science. While the problem of estimating edit distance has been studied extensively, the equally important question of actually…

Data Structures and Algorithms · Computer Science 2018-05-08 Moses Charikar , Ofir Geri , Michael P. Kim , William Kuszmaul

String edit distances have been used for decades in applications ranging from spelling correction and web search suggestions to DNA analysis. Most string edit distances are variations of the Levenshtein distance and consider only…

Genomics · Quantitative Biology 2022-05-12 Taylor Petty , Jan Hannig , Tunde I Huszar , Hari Iyer

Edit distance with moves (EDM) is a string-to-string distance measure that includes substring moves in addition to ordinal editing operations to turn one string to the other. Although optimizing EDM is intractable, it has many applications…

Data Structures and Algorithms · Computer Science 2014-08-27 Yoshimasa Takabatake , Yasuo Tabei , Hiroshi Sakamoto

We show that the edit distance between two strings of length $n$ can be computed within a factor of $f(\epsilon)$ in $n^{1+\epsilon}$ time as long as the edit distance is at least $n^{1-\delta}$ for some $\delta(\epsilon) > 0$.

Data Structures and Algorithms · Computer Science 2020-01-29 Joshua Brakensiek , Aviad Rubinstein

Similarity search is an important problem in information retrieval. This similarity is based on a distance. Symbolic representation of time series has attracted many researchers recently, since it reduces the dimensionality of these high…

Information Retrieval · Computer Science 2010-06-18 Muhammad Marwan Muhammad Fuad , Pierre-François Marteau

In this paper we exploit concepts of information theory to address the fundamental problem of identifying and defining the most suitable tools to extract, in a automatic and agnostic way, information from a generic string of characters. We…

Statistical Mechanics · Physics 2009-11-10 Andrea Baronchelli , Emanuele Caglioti , Vittorio Loreto

Edit distance is a measure of similarity of two strings based on the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. The edit distance can be computed exactly using a…

Data Structures and Algorithms · Computer Science 2021-02-17 Diptarka Chakraborty , Debarati Das , Elazar Goldenberg , Michal Koucky , Michael Saks

The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic programming solution for this problem computes the edit-distance between…

Data Structures and Algorithms · Computer Science 2016-10-05 Danny Hermelin , Gad M. Landau , Shir Landau , Oren Weimann

We present an algorithm for approximating the edit distance between two strings of length $n$ in time $n^{1+\varepsilon}$ up to a constant factor, for any $\varepsilon>0$. Our result completes a research direction set forth in the recent…

Data Structures and Algorithms · Computer Science 2022-07-18 Alexandr Andoni , Negev Shekel Nosatzki

In this paper, we investigate the convergence exponent of Pierce expansion digit sequences. We explore some basic properties of the convergence exponent as a real-valued function defined on the closed unit interval, as well as those of the…

Number Theory · Mathematics 2025-07-08 Min Woong Ahn

An elastic-degenerate (ED) string is a sequence of $n$ sets of strings of total length $N$, which was recently proposed to model a set of similar sequences. The ED string matching (EDSM) problem is to find all occurrences of a pattern of…

Data Structures and Algorithms · Computer Science 2021-05-05 Giulia Bernardini , Paweł Gawrychowski , Nadia Pisanti , Solon P. Pissis , Giovanna Rosone

The problem of computing the edit-distance between a string and a finite automaton arises in a variety of applications in computational biology, text processing, and speech recognition. This paper presents linear-space algorithms for…

Formal Languages and Automata Theory · Computer Science 2009-04-30 Cyril Allauzen , Mehryar Mohri

Edit distance, also known as Levenshtein distance, is an essential way to compare two strings that proved to be particularly useful in the analysis of genetic sequences and natural language processing. However, edit distance is a discrete…

Machine Learning · Computer Science 2019-04-30 Evgenii Ofitserov , Vasily Tsvetkov , Vadim Nazarov
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