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The problem of counting occurrences of query graphs in a large data graph, known as subgraph counting, is fundamental to several domains such as genomics and social network analysis. Many important special cases (e.g. triangle counting)…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-04-05 Venkatesan T. Chakaravarthy , Michael Kapralov , Prakash Murali , Fabrizio Petrini , Xinyu Que , Yogish Sabharwal , Baruch Schieber

Spanning tree modulus is a generalization of effective resistance that is closely related to graph strength and fractional arboricity. The optimal edge density associated with spanning tree modulus is known to produce two hierarchical…

Combinatorics · Mathematics 2024-07-26 Nathan Albin , Kapila Kottegoda , Pietro Poggi-Corradini

Subgraph counting aims to count occurrences of a template T in a given network G(V, E). It is a powerful graph analysis tool and has found real-world applications in diverse domains. Scaling subgraph counting problems is known to be memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-06 Langshi Chen , Jiayu Li , Ariful Azad , Cenk Sahinalp , Madhav Marathe , Anil Vullikanti , Andrey Nikolaev , Egor Smirnov , Ruslan Israfilov , Judy Qiu

We study the problem of connecting the parts of a multipartite graph using a minimum number of edges under a matching constraint. We introduce interconnection trees, defined as matchings whose projections onto the quotient graph form a…

Computational Complexity · Computer Science 2026-05-19 Noé Demange , Yann Strozecki

The complexity of a reasoning task over a graphical model is tied to the induced width of the underlying graph. It is well-known that the conditioning (assigning values) on a subset of variables yields a subproblem of the reduced complexity…

Data Structures and Algorithms · Computer Science 2012-07-19 Bozhena Bidyuk , Rina Dechter

We study online robust matrix completion on graphs. At each iteration a vector with some entries missing is revealed and our goal is to reconstruct it by identifying the underlying low-dimensional subspace from which the vectors are drawn.…

Information Theory · Computer Science 2016-05-16 Symeon Chouvardas , Mohammed Amin Abdullah , Lucas Claude , Moez Draief

Graph matching is a challenging problem with very important applications in a wide range of fields, from image and video analysis to biological and biomedical problems. We propose a robust graph matching algorithm inspired in…

Optimization and Control · Mathematics 2013-11-26 Marcelo Fiori , Pablo Sprechmann , Joshua Vogelstein , Pablo Musé , Guillermo Sapiro

Probabilistic graphical models offer a powerful framework to account for the dependence structure between variables, which is represented as a graph. However, the dependence between variables may render inference tasks intractable. In this…

In the Properly Colored Spanning Tree problem, we are given an edge-colored undirected graph and the goal is to find a properly colored spanning tree, i.e., a spanning tree in which any two adjacent edges have distinct colors. The problem…

Data Structures and Algorithms · Computer Science 2024-02-02 Yuhang Bai , Kristóf Bérczi , Gergely Csáji , Tamás Schwarcz

Graph mining for structural patterns is a fundamental task in many applications. Compilation-based graph mining systems, represented by AutoMine, generate specialized algorithms for the provided patterns and substantially outperform other…

Performance · Computer Science 2019-12-02 Daniel Mawhirter , Sam Reinehr , Connor Holmes , Tongping Liu , Bo Wu

Treemaps have been widely applied to the visualization of hierarchical data. A treemap takes a weighted tree and visualizes its leaves in a nested planar geometric shape, with sub-regions partitioned such that each sub-region has an area…

Graphics · Computer Science 2023-09-01 Mehdi Behroozi , Reyhaneh Mohammadi , Cody Dunne

Color-constrained subgraph problems are those where we are given an edge-colored (directed or undirected) graph and the task is to find a specific type of subgraph, like a spanning tree, an arborescence, a single-source shortest path tree,…

Data Structures and Algorithms · Computer Science 2024-07-24 P. S. Ardra , Jasine Babu , Kritika Kashyap , R. Krithika , Sreejith K. Pallathumadam , Deepak Rajendraprasad

This paper addresses matrix approximation problems for matrices that are large, sparse and/or that are representations of large graphs. To tackle these problems, we consider algorithms that are based primarily on coarsening techniques,…

Numerical Analysis · Computer Science 2018-10-03 Shashanka Ubaru , Yousef Saad

The Maximum Common Subgraph (MCS) problem plays a key role in many applications, including cheminformatics, bioinformatics, and pattern recognition, where it is used to identify the largest shared substructure between two graphs. Although…

Data Structures and Algorithms · Computer Science 2026-03-25 Buddhi Kothalawala , Henning Koehler , Muhammad Farhan

Graph neural networks have been successful for machine learning, as well as for combinatorial and graph problems such as the Subgraph Isomorphism Problem and the Traveling Salesman Problem. We describe an approach for computing graph…

Machine Learning · Computer Science 2023-11-20 Alvin Chiu , Mithun Ghosh , Reyan Ahmed , Kwang-Sung Jun , Stephen Kobourov , Michael T. Goodrich

We investigate the tractability of a simple fusion of two fundamental structures on graphs, a spanning tree and a perfect matching. Specifically, we consider the following problem: given an edge-weighted graph, find a minimum-weight…

Data Structures and Algorithms · Computer Science 2024-07-12 Kristóf Bérczi , Tamás Király , Yusuke Kobayashi , Yutaro Yamaguchi , Yu Yokoi

In the last decade, algorithmic frameworks based on a structural graph parameter called mim-width have been developed to solve generally NP-hard problems. However, it is known that the frameworks cannot be applied to the Clique problem, and…

Data Structures and Algorithms · Computer Science 2024-05-27 Yota Otachi , Akira Suzuki , Yuma Tamura

Graph neural networks are useful for learning problems, as well as for combinatorial and graph problems such as the Subgraph Isomorphism Problem and the Traveling Salesman Problem. We describe an approach for computing Steiner Trees by…

Machine Learning · Computer Science 2023-05-02 Reyan Ahmed , Mithun Ghosh , Kwang-Sung Jun , Stephen Kobourov

In this paper, we are interested in algorithms that take in input an arbitrary graph $G$, and that enumerate in output all the (inclusion-wise) maximal "subgraphs" of $G$ which fulfil a given property $\Pi$. All over this paper, we study…

Discrete Mathematics · Computer Science 2023-03-09 Caroline Brosse , Aurélie Lagoutte , Vincent Limouzy , Arnaud Mary , Lucas Pastor

We study the crossing-minimization problem in a layered graph drawing of planar-embedded rooted trees whose leaves have a given total order on the first layer, which adheres to the embedding of each individual tree. The task is then to…

Discrete Mathematics · Computer Science 2024-02-29 Julia Katheder , Stephen G. Kobourov , Axel Kuckuk , Maximilian Pfister , Johannes Zink