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Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…

Populations and Evolution · Quantitative Biology 2021-06-30 Thomas Wiehe

Phylogenetic invariants are certain polynomials in the joint probability distribution of a Markov model on a phylogenetic tree. Such polynomials are of theoretical interest in the field of algebraic statistics and they are also of practical…

Populations and Evolution · Quantitative Biology 2008-01-21 Nicholas Eriksson

We analyze certain stationary fields with linear regressions and quadratic conditional variances. This classic probabilistic problem leads somewhat unexpectedly to stationary Markov processes closely tied to non-commutative probability…

Probability · Mathematics 2007-05-23 Wlodzimierz Bryc

Planar polynomial automorphisms are polynomial maps of the plane whose inverse is also a polynomial map. A map is reversible if it is conjugate to its inverse. Here we obtain a normal form for automorphisms that are reversible by an…

Chaotic Dynamics · Physics 2010-06-22 A. Gomez , J. D. Meiss

We tackle the regularisation of a differential system related to generalised Krawtchouk polynomials. We show a straightforward connection between certain auxiliary quantities involving the recurrence coefficients of these polynomials and…

Classical Analysis and ODEs · Mathematics 2026-03-31 Galina Filipuk , Juan F. Mañas-Mañas , Juan J. Moreno-Balcázar , Cristina Rodríguez-Perales

We investigate reflected random walks in the quarter plane, with particular emphasis on the time spent along the reflection boundary axes. Assuming the drift of the random walk lies within the cone, the local time converges -- without the…

Probability · Mathematics 2025-07-08 Viet Hung Hoang , Kilian Raschel

This paper introduces Farey Recursive Functions and investigates their basic properties. Farey Recursive Functions are a special type of recursive function from the rationals to a commutative ring. The recursion of these functions is…

Geometric Topology · Mathematics 2021-07-28 Eric Chesebro , Cory Emlen , Kenton Ke , Denise LaFontaine , Kelly McKinnie , Catherine Rigby

Fractional revival is a quantum transport phenomenon important for entanglement generation in spin networks. This takes place whenever a continuous-time quantum walk maps the characteristic vector of a vertex to a superposition of the…

Quantum Physics · Physics 2018-01-30 Ada Chan , Gabriel Coutinho , Christino Tamon , Luc Vinet , Hanmeng Zhan

A reformulation of the path length of binary search trees is given in terms of permutations, allowing to extend the definition to the instance of words, where the letters are obtained by independent geometric random variables (with…

Combinatorics · Mathematics 2007-05-23 Helmut Prodinger

In this letter we give fourth-order autonomous recurrence relations with two invariants, whose degree growth is cubic or exponential. These examples contradict the common belief that maps with sufficiently many invariants can have at most…

Exactly Solvable and Integrable Systems · Physics 2019-05-31 G. Gubbiotti , N. Joshi , D. T. Tran , C-M. Viallet

A popular line of research in evolutionary biology is the use of time-calibrated phylogenies for the inference of diversification processes. This requires computing the likelihood of a given ultrametric tree as the reconstructed tree…

Populations and Evolution · Quantitative Biology 2013-01-24 Amaury Lambert , Hélène Morlon , Rampal S. Etienne

Our original results refer to multivariate recurrences: discrete multitime diagonal recurrence, bivariate recurrence, trivariate recurrence, solutions tailored to particular situations, second order multivariate recurrences, characteristic…

Dynamical Systems · Mathematics 2015-06-16 Cristian Ghiu , Raluca Tuliga , Constantin Udriste , Ionel Tevy

Boelen et al. (2010) deduced a $q$-discrete Painlev\'e equation satisfied by the recurrence coefficients of orthogonal polynomials and conjectured that the equation had a unique positive solution. We prove their conjecture and discuss…

Classical Analysis and ODEs · Mathematics 2021-10-18 Tomas Lasic Latimer

The theory of ``Markov-up'' processes is being developed. This is a new class of stochastic processes with ``partial'' markovian features; it could also be called ``one-sided Markov''. Such a behavior may be found in the real world and in…

Probability · Mathematics 2024-07-01 D. O. Kalikaeva

We consider the Wright-Fisher model for a population of $N$ individuals, each identified with a sequence of a finite number of sites, and single-crossover recombination between them. We trace back the ancestry of single individuals from the…

Probability · Mathematics 2014-04-24 Ellen Baake , Ute von Wangenheim

We consider multiple orthogonal polynomials associated with the exponential cubic weight e^{-x^3} over two contours in the complex plane. We study the basic properties of these polynomials, including the Rodrigues formula and…

Classical Analysis and ODEs · Mathematics 2015-02-05 Walter Van Assche , Galina Filipuk , Lun Zhang

We consider the range $R^{(n)}$, the tree made up of visited vertices by a diffusive null-recurrent randomly biased walk $\mathbb{X}$ on a Galton-Watson tree $\mathbb{T}$ up to the $n$-th return time to its root and we consider the…

Probability · Mathematics 2024-10-29 Alexis Kagan

The probability that two randomly selected phylogenetic trees of the same size are isomorphic is found to be asymptotic to a decreasing exponential modulated by a polynomial factor. The number of symmetrical nodes in a random phylogenetic…

Probability · Mathematics 2009-01-07 Miklos Bona , Philippe Flajolet

Standard techniques for treating linear recurrences no longer apply for quadratic recurrences. It is not hard to determine asymptotics for a specific parametrized model over a wide domain of values (all $p \neq 1/2$ here). The gap between…

Number Theory · Mathematics 2024-11-08 Steven Finch

We pursue the view that quantum theory may be an emergent structure related to large space-time scales. In particular, we consider classical Hamiltonian systems in which the intrinsic proper time evolution parameter is related through a…

General Relativity and Quantum Cosmology · Physics 2014-11-17 Hans-Thomas Elze
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