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Coarse-grained modeling and efficient computer simulations are critical to the study of complex molecular processes with many degrees of freedom and multiple spatiotemporal scales. Variational implicit-solvent model (VISM) for biomolecular…

Chemical Physics · Physics 2022-10-26 Shuang Liu , Zirui Zhang , Li-Tien Cheng , Bo Li

Graph neural networks (GNNs) start to gain momentum after showing significant performance improvement in a variety of domains including molecular science, recommendation, and transportation. Turning such performance improvement of GNNs into…

Hardware Architecture · Computer Science 2021-07-20 Zhihui Zhang , Jingwen Leng , Shuwen Lu , Youshan Miao , Yijia Diao , Minyi Guo , Chao Li , Yuhao Zhu

Large-language models (LLMs) are rapidly being applied to radiology, enabling automated image interpretation and report generation tasks. Their deployment in clinical practice requires both high diagnostic accuracy and low inference…

Tissues and Organs · Quantitative Biology 2025-11-11 Jyun-Ping Kao

While Model Predictive Control (MPC) delivers strong performance across robotics applications, solving the underlying (batches of) nonlinear trajectory optimization (TO) problems online remains computationally demanding. Existing…

Robotics · Computer Science 2026-05-11 Alexander Du , Emre Adabag , Gabriel Bravo-Palacios , Brian Plancher

Hardware memory disaggregation (HMD) is an emerging technology that enables access to remote memory, thereby creating expansive memory pools and reducing memory underutilization in datacenters. However, a significant challenge arises when…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-25 Archit Patke , Christian Pinto , Saurabh Jha , Haoran Qiu , Zbigniew Kalbarczyk , Ravishankar Iyer

Logical ring is a core component in membership protocol. However, the logic ring fails to consider the underlying physical latency, resulting in a high diameter. To address this issue, we introduce Diameter-Guided Ring Optimization (DGRO),…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-16 Shixun Wu , Krishnan Raghavan , Sheng Di , Zizhong Chen , Franck Cappello

Efficient mixed-precision matrix multiply accumulate (MMA) operations are critical for accelerating deep learning workloads on GPGPUs. However, existing open-source dot product implementations for Tensor Cores rely on discrete arithmetic…

Hardware Architecture · Computer Science 2026-04-07 Nikhil Rout , Blaise Tine

We present Graphite, a GPU-accelerated nonlinear least squares graph optimization framework. It provides a CUDA C++ interface to enable the sharing of code between a real-time application, such as a SLAM system, and its optimization tasks.…

Robotics · Computer Science 2026-03-17 Shishir Gopinath , Karthik Dantu , Steven Y. Ko

With high computation power and memory bandwidth, graphics processing units (GPUs) lend themselves to accelerate data-intensive analytics, especially when such applications fit the single instruction multiple data (SIMD) model. However,…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-12-12 Hang Liu , H. Howie Huang

Modern large-scale computing systems (data centers, supercomputers, cloud and edge setups and high-end cyber-physical systems) employ heterogeneous architectures that consist of multicore CPUs, general-purpose many-core GPUs, and…

Real time processing for teamwork action recognition is a challenge, due to complex computational models to achieve high system performance. Hence, this paper proposes a framework based on Graphical Processing Units (GPUs) to achieve a…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-10-15 Mohamed Elhoseiny , Hossam Faheem , Taymour Nazmy , Eman Shaaban

For large-scale graph analytics on the GPU, the irregularity of data access and control flow, and the complexity of programming GPUs, have presented two significant challenges to developing a programmable high-performance graph library.…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-01-06 Yangzihao Wang , Yuechao Pan , Andrew Davidson , Yuduo Wu , Carl Yang , Leyuan Wang , Muhammad Osama , Chenshan Yuan , Weitang Liu , Andy T. Riffel , John D. Owens

Purpose: Visual perception enables robots to perceive the environment. Visual data is processed using computer vision algorithms that are usually time-expensive and require powerful devices to process the visual data in real-time, which is…

Computer Vision and Pattern Recognition · Computer Science 2022-11-22 Sandro Costa Magalhães , Filipe Neves Santos , Pedro Machado , António Paulo Moreira , Jorge Dias

Graphics Processing Units (GPUs) with high computational capabilities used as modern parallel platforms to deal with complex computational problems. We use this platform to solve large-scale linear programing problems by revised simplex…

Optimization and Control · Mathematics 2018-03-14 Arash Raeisi Gahrouei , Mehdi Ghatee

Over the last few years the GPGPU (General-Purpose computing on Graphics Processing Units) paradigm represented a remarkable development in the world of computing. Computing for High-Energy Physics is no exception: several works have…

Transformers are gaining increasing attention across Natural Language Processing (NLP) application domains due to their outstanding accuracy. However, these data-intensive models add significant performance demands to the existing computing…

Hardware Architecture · Computer Science 2025-08-07 Ahmed J. Abdelmaksoud , Shady Agwa , Themis Prodromakis

GPU-based heterogeneous architectures are now commonly used in HPC clusters. Due to their architectural simplicity specialized for data-level parallelism, GPUs can offer much higher computational throughput and memory bandwidth than CPUs in…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-15 Urvij Saroliya , Eishi Arima , Dai Liu , Martin Schulz

Specialized computational units that perform small matrix multiplications as primitive operations are typically present in modern AI accelerators. However, these Matrix Multiplication Units (MMUs) are often underutilized for many…

Data Structures and Algorithms · Computer Science 2025-09-25 Aleksandros Sobczyk , Giuseppe Sorrentino , Anastasios Zouzias

Processing-in-memory (PIM) has emerged as the go to solution for addressing the von Neumann bottleneck in edge AI accelerators. However, state-of-the-art (SoTA) digital PIM approaches suffer from low compute density, primarily due to the…

Hardware Architecture · Computer Science 2025-10-23 Mukul Lokhande , Narendra Singh Dhakad , Seema Chouhan , Akash Sankhe , Santosh Kumar Vishvakarma

Processing-In-Memory (PIM) architectures offer a promising approach to accelerate Graph Neural Network (GNN) training and inference. However, various PIM devices such as ReRAM, FeFET, PCM, MRAM, and SRAM exist, with each device offering…