Related papers: Revisiting Tree Canonization using polynomials
We show that the class of chordal claw-free graphs admits LREC$_=$-definable canonization. LREC$_=$ is a logic that extends first-order logic with counting by an operator that allows it to formalize a limited form of recursion. This…
Background. The supertree problem, i.e., the task of finding a common refinement of a set of rooted trees is an important topic in mathematical phylogenetics. The special case of a common leaf set $L$ is known to be solvable in linear time.…
We propose a simple and efficient local algorithm for graph isomorphism which succeeds for a large class of sparse graphs. This algorithm produces a low-depth canonical labeling, which is a labeling of the vertices of the graph that…
We define a search problem on trees that closely captures the backtracking behavior of all current practical graph isomorphism algorithms. Given two trees with colored leaves, the goal is to find two leaves of matching color, one in each of…
Motivated by a recent result of Elberfeld, Jakoby and Tantau showing that $\mathsf{MSO}$ properties are Logspace computable on graphs of bounded tree-width, we consider the complexity of computing the determinant of the adjacency matrix of…
To determine if two lists of numbers are the same set, we sort both lists and see if we get the same result. The sorted list is a canonical form for the equivalence relation of set equality. Other canonical forms arise in graph isomorphism…
We present an algorithm that enumerates all the minimal triangulations of a graph in incremental polynomial time. Consequently, we get an algorithm for enumerating all the proper tree decompositions, in incremental polynomial time, where…
In this paper, we show the existence of a polynomial time graph isomorphism algorithm for all graphs excluding graphs that are locally trianglefree. This particular class of graphs allows to divide the graph into neighbourhood sub-graph…
This paper develops two heuristic algorithms to solve graph isomorphism, using free energy encoding. The first algorithm uses four types of encoding refinement techniques such that every graph can be distinguished by a canonical number…
The notion of treewidth plays an important role in theoretical and practical studies of graph problems. It has been recognized that, especially in practical environments, when computing the treewidth of a graph it is invaluable to first…
A function $f$ of a graph is called a complete graph invariant if the isomorphism of graphs $G$ and $H$ is equivalent to the equality $f(G)=f(H)$. If, in addition, $f(G)$ is a graph isomorphic to $G$, then $f$ is called a canonical form for…
The Aho, Hopcroft and Ullman (AHU) algorithm has been the state of the art since the 1970s for determining in linear time whether two unordered rooted trees are isomorphic or not. However, it has been criticized (by Campbell and Radford)…
In a previous work, we gave a metric on the class of semibinary tree-sibling time consistent phylogenetic networks that is computable in polynomial time; in particular, the problem of deciding if two networks of this kind are isomorphic is…
We construct tree-decompositions of graphs that distinguish all their k-blocks and tangles of order k, for any fixed integer k. We describe a family of algorithms to construct such decompositions, seeking to maximize their diversity subject…
Decision trees are well-known due to their ease of interpretability. To improve accuracy, we need to grow deep trees or ensembles of trees. These are hard to interpret, offsetting their original benefits. Shapley values have recently become…
Given two messages - as linear sequences of letters, it is immediate to determine whether one can be transformed into the other by simple substitution cipher of the letters. On the other hand, if the letters are carried as labels on nodes…
Graph classes of bounded tree rank were introduced recently in the context of the model checking problem for first-order logic of graphs. These graph classes are a common generalization of graph classes of bounded degree and bounded…
In this paper, we give a constructive proof of the fact that the treewidth of a graph is at most its divisorial gonality. The proof gives a polynomial time algorithm to construct a tree decomposition of width at most $k$, when an effective…
Individualization-Refinement (IR) algorithms form the standard method and currently the only practical method for symmetry computations of graphs and combinatorial objects in general. Through backtracking, on each graph an IR-algorithm…
The treedepth of a graph $G$ is the least possible depth of an elimination forest of $G$: a rooted forest on the same vertex set where every pair of vertices adjacent in $G$ is bound by the ancestor/descendant relation. We propose an…