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We propose a novel method for topological analysis of unweighted graphs which is based on \textit{persistent homology}. The proposed method maps the input graph to a complete weighted graph where the weighting function maps each edge to a…

Algebraic Topology · Mathematics 2020-07-31 Padraig Corcoran

Graph Neural Networks (GNNs) excel at learning from pairwise interactions but often overlook multi-way and hierarchical relationships. Topological Deep Learning (TDL) addresses this limitation by leveraging combinatorial topological spaces.…

Link prediction is a fundamental task in dynamic graph learning (DGL), inherently shaped by the topology of the DG. Recent advancements in dynamic graph neural networks (DGNN), primarily by modeling the relationships among nodes via a…

Machine Learning · Computer Science 2025-04-29 Ling Wang , Minglian Han

Understanding the dynamic processes of the glassy system continues to be challenging. Recent advances have shown the power of graph neural networks (GNNs) for determining the correlation between structure and dynamics in the glassy system.…

Disordered Systems and Neural Networks · Physics 2023-10-18 Xiao Jiang , Zean Tian , Kenli Li

Digraph Representation Learning (DRL) aims to learn representations for directed homogeneous graphs (digraphs). Prior work in DRL is largely constrained (e.g., limited to directed acyclic graphs), or has poor generalizability across tasks…

Machine Learning · Computer Science 2022-09-30 Honglu Zhou , Advith Chegu , Samuel S. Sohn , Zuohui Fu , Gerard de Melo , Mubbasir Kapadia

Graphs are a highly expressive abstraction for modeling entities and their relations, such as molecular structures, social networks, and traffic networks. Deep Graph Networks (DGNs) have emerged as a family of deep learning models that can…

Machine Learning · Computer Science 2024-10-16 Alessio Gravina

Graph neural networks (GNNs) have emerged as a powerful tool for graph classification and representation learning. However, GNNs tend to suffer from over-smoothing problems and are vulnerable to graph perturbations. To address these…

Machine Learning · Computer Science 2021-11-01 Yuzhou Chen , Baris Coskunuzer , Yulia R. Gel

Graph embedding, aiming to learn low-dimensional representations (aka. embeddings) of nodes, has received significant attention recently. Recent years have witnessed a surge of efforts made on static graphs, among which Graph Convolutional…

Machine Learning · Computer Science 2021-04-08 Zeyu Cui , Zekun Li , Shu Wu , Xiaoyu Zhang , Qiang Liu , Liang Wang , Mengmeng Ai

Graph Signal Processing deals with the problem of analyzing and processing signals defined on graphs. In this paper, we introduce a novel filtering method for graph-based signals by employing ideas from topological data analysis. We begin…

Signal Processing · Electrical Eng. & Systems 2024-08-27 Matias de Jong van Lier , Sebastián Elías Graiff Zurita , Shizuo Kaji

Persistent homology, a technique from computational topology, has recently shown strong empirical performance in the context of graph classification. Being able to capture long range graph properties via higher-order topological features,…

Machine Learning · Computer Science 2024-12-20 Rubén Ballester , Bastian Rieck

Predicting links in sparse, continuously evolving networks is a central challenge in network science. Conventional heuristic methods and deep learning models, including Graph Neural Networks (GNNs), are typically designed for static graphs…

Social and Information Networks · Computer Science 2026-02-17 Nafiseh Sadat Sajadi , Behnam Bahrak , Mahdi Jafari Siavoshani

Accurate traffic forecasting is essential for effective urban planning and congestion management. Deep learning (DL) approaches have gained colossal success in traffic forecasting but still face challenges in capturing the intricacies of…

Artificial Intelligence · Computer Science 2024-04-19 Songtao Huang , Hongjin Song , Tianqi Jiang , Akbar Telikani , Jun Shen , Qingguo Zhou , Binbin Yong , Qiang Wu

This study presents a hierarchical mining framework for high-dimensional imbalanced data, leveraging a depth graph model to address the inherent performance limitations of conventional approaches in handling complex, high-dimensional data…

Machine Learning · Computer Science 2025-02-07 Yijiashun Qi , Quanchao Lu , Shiyu Dou , Xiaoxuan Sun , Muqing Li , Yankaiqi Li

While standard persistent homology has been successful in extracting information from metric datasets, its applicability to more general data, e.g. directed networks, is hindered by its natural insensitivity to asymmetry. We study a…

Algebraic Topology · Mathematics 2017-04-17 Samir Chowdhury , Facundo Mémoli

The directed graph (digraph), as a generalization of undirected graphs, exhibits superior representation capability in modeling complex topology systems and has garnered considerable attention in recent years. Despite the notable efforts…

Machine Learning · Computer Science 2025-05-05 Xunkai Li , Zhengyu Wu , Kaichi Yu , Hongchao Qin , Guang Zeng , Rong-Hua Li , Guoren Wang

Dynamic graphs capture evolving interactions between entities, such as in social networks, online learning platforms, and crowdsourcing projects. For dynamic graph modeling, dynamic graph neural networks (DGNNs) have emerged as a mainstream…

Machine Learning · Computer Science 2025-03-04 Xingtong Yu , Zhenghao Liu , Xinming Zhang , Yuan Fang

Spectral graph convolutional neural networks (CNNs) require approximation to the convolution to alleviate the computational complexity, resulting in performance loss. This paper proposes the topology adaptive graph convolutional network…

Machine Learning · Computer Science 2018-02-13 Jian Du , Shanghang Zhang , Guanhang Wu , Jose M. F. Moura , Soummya Kar

Prediction and discovery of new materials with desired properties are at the forefront of quantum science and technology research. A major bottleneck in this field is the computational resources and time complexity related to finding new…

Conventional deep neural nets (DNNs) initialize network parameters at random and then optimize each one via stochastic gradient descent (SGD), resulting in substantial risk of poor-performing local minima. Focusing on image interpolation…

Computer Vision and Pattern Recognition · Computer Science 2026-04-08 Xue Zhang , Bingshuo Hu , Gene Cheung

In recent years, graph neural networks (GNNs) have emerged as a potent tool for learning on graph-structured data and won fruitful successes in varied fields. The majority of GNNs follow the message-passing paradigm, where representations…

Machine Learning · Computer Science 2024-08-30 Yurui Lai , Xiaoyang Lin , Renchi Yang , Hongtao Wang