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Drug toxicity remains a major challenge in pharmaceutical development. Recent machine learning models have improved in silico toxicity prediction, but their reliance on annotated data and lack of interpretability limit their applicability.…

Machine Learning · Computer Science 2025-11-06 Jueon Park , Yein Park , Minju Song , Soyon Park , Donghyeon Lee , Seungheun Baek , Jaewoo Kang

Large-scale, high-quality data are considered an essential factor for the successful application of many deep learning techniques. Meanwhile, numerous real-world deep learning tasks still have to contend with the lack of sufficient amounts…

Machine Learning · Computer Science 2023-10-26 Ou Wu , Rujing Yao

Having a unified, coherent taxonomy is essential for effective knowledge representation in domain-specific applications as diverse terminologies need to be mapped to underlying concepts. Traditional manual approaches to taxonomy alignment…

Natural language text corpora are often available as sets of syntactically parsed trees. A wide range of expressive tree queries are possible over such parsed trees that open a new avenue in searching over natural language text. They not…

Databases · Computer Science 2012-08-02 Pirooz Chubak , Davood Rafiei

Autonomous agents such as Claude Code and Codex now operate for hours or even days. Understanding their runtime behavior has become critical for downstream tasks such as diagnosing inefficiencies, fixing bugs, and ensuring better oversight.…

Artificial Intelligence · Computer Science 2026-05-14 Jie Gao , Kaiser Sun , Jen-tse Huang , Katherine Van Koevering , Sijie Ji , Heyuan Huang , Weiyan Shi , Zhuoran Lu , Ziang Xiao , Daniel Khashabi , Mark Dredze

Large language models have exhibited intriguing in-context learning capability, achieving promising zero- and few-shot performance without updating the parameters. However, conventional in-context learning is usually restricted by length…

Computation and Language · Computer Science 2022-12-14 Yaru Hao , Yutao Sun , Li Dong , Zhixiong Han , Yuxian Gu , Furu Wei

Naming is very important in software development, as names are often the only vehicle of meaning about what the code is intended to do. A recent study on how developers choose names collected the names given by different developers for the…

Software Engineering · Computer Science 2024-02-16 Rachel Alpern , Ido Lazer , Issar Tzachor , Hanit Hakim , Sapir Weissbuch , Dror G. Feitelson

This paper presents LITE, an LLM-based evaluation method designed for efficient and flexible assessment of taxonomy quality. To address challenges in large-scale taxonomy evaluation, such as efficiency, fairness, and consistency, LITE…

Computation and Language · Computer Science 2025-04-03 Lin Zhang , Zhouhong Gu , Suhang Zheng , Tao Wang , Tianyu Li , Hongwei Feng , Yanghua Xiao

Graph plays a significant role in representing and analyzing complex relationships in real-world applications such as citation networks, social networks, and biological data. Recently, Large Language Models (LLMs), which have achieved…

Machine Learning · Computer Science 2024-04-25 Yuhan Li , Zhixun Li , Peisong Wang , Jia Li , Xiangguo Sun , Hong Cheng , Jeffrey Xu Yu

Recommender systems play a pivotal role in providing relevant content to users. With the rapid development of large language models (LLMs), researchers have begun utilizing LLMs to build more powerful recommender systems. However, existing…

Information Retrieval · Computer Science 2025-06-26 Haochen Zhang , Tianyi Zhang , Junze Yin , Oren Gal , Anshumali Shrivastava , Vladimir Braverman

Large language models (LLMs) have shown remarkable ability to generate code, yet their outputs often violate syntactic or semantic constraints when guided only through natural language prompts. We introduce TreeCoder, the most general and…

Machine Learning · Computer Science 2026-04-27 Henrijs Princis , Arindam Sharma , Cristina David

Building on the computer science concept of code smells, we initiate the study of law smells, i.e., patterns in legal texts that pose threats to the comprehensibility and maintainability of the law. With five intuitive law smells as running…

Information Retrieval · Computer Science 2021-10-26 Corinna Coupette , Dirk Hartung , Janis Beckedorf , Maximilian Böther , Daniel Martin Katz

In recent times, it has been shown that one can use code as data to aid various applications such as automatic commit message generation, automatic generation of pull request descriptions and automatic program repair. Take for instance the…

Machine Learning · Computer Science 2021-06-14 Syed Arbaaz Qureshi , Sonu Mehta , Ranjita Bhagwan , Rahul Kumar

Developers spend a significant amount of time searching their local codebase. To help them search efficiently, researchers have proposed novel tools that apply state-of-the-art information retrieval algorithms to retrieve relevant code…

Software Engineering · Computer Science 2014-01-28 Xi Ge , David Shepherd , Kostadin Damevski , Emerson Murphy-Hill

Understanding student difficulties in programming is a complex challenge due to the wide range of topics and the abundant varieties of misconceptions and errors. This paper presents the design and development of a fine-grained taxonomy that…

Computers and Society · Computer Science 2026-05-27 Dimitri Eckert , Christian Kautz

Legal case retrieval plays an important role for legal practitioners to effectively retrieve relevant cases given a query case. Most existing neural legal case retrieval models directly encode the whole legal text of a case to generate a…

Information Retrieval · Computer Science 2023-09-07 Yanran Tang , Ruihong Qiu , Xue Li

Extracting entities and relations for types of interest from text is important for understanding massive text corpora. Traditionally, systems of entity relation extraction have relied on human-annotated corpora for training and adopted an…

Computation and Language · Computer Science 2017-06-06 Xiang Ren , Zeqiu Wu , Wenqi He , Meng Qu , Clare R. Voss , Heng Ji , Tarek F. Abdelzaher , Jiawei Han

Recent advances in Large Language Models (LLMs) have introduced a new paradigm for software development, where source code is generated from natural language prompts. While this paradigm significantly boosts development productivity,…

Human-Computer Interaction · Computer Science 2026-05-06 Jinsheng Ba , Sverrir Thorgeirsson , Zhendong Su

A prerequisite for coding agents to perform tasks on large repositories is code localization - the identification of relevant files, classes, and functions to work on. While repository-level code localization has been performed using…

Prompting is a mainstream paradigm for adapting large language models to specific natural language processing tasks without modifying internal parameters. Therefore, detailed supplementary knowledge needs to be integrated into external…

Computation and Language · Computer Science 2024-12-03 Kaiyan Chang , Songcheng Xu , Chenglong Wang , Yingfeng Luo , Xiaoqian Liu , Tong Xiao , Jingbo Zhu