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Knowledge Graphs (KG) and associated Knowledge Graph Embedding (KGE) models have recently begun to be explored in the context of drug discovery and have the potential to assist in key challenges such as target identification. In the drug…

Biomolecules · Quantitative Biology 2022-06-01 Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Charles Tapley Hoyt , William L Hamilton

Little is known about the trustworthiness of predictions made by knowledge graph embedding (KGE) models. In this paper we take initial steps toward this direction by investigating the calibration of KGE models, or the extent to which they…

Artificial Intelligence · Computer Science 2020-10-07 Tara Safavi , Danai Koutra , Edgar Meij

Knowledge graph embedding (KGE) is an increasingly popular technique that aims to represent entities and relations of knowledge graphs into low-dimensional semantic spaces for a wide spectrum of applications such as link prediction,…

Machine Learning · Computer Science 2023-10-17 Jiahang Cao , Jinyuan Fang , Zaiqiao Meng , Shangsong Liang

Rule mining on knowledge graphs allows for explainable link prediction. Contrarily, embedding-based methods for link prediction are well known for their generalization capabilities, but their predictions are not interpretable. Several…

Artificial Intelligence · Computer Science 2024-06-17 N'Dah Jean Kouagou , Arif Yilmaz , Michel Dumontier , Axel-Cyrille Ngonga Ngomo

While Knowledge Graphs (KGs) have become increasingly popular across various scientific disciplines for their ability to model and interlink huge quantities of data, essentially all real-world KGs are known to be incomplete. As such, with…

Machine Learning · Computer Science 2025-05-09 Jeffrey Seathrún Sardina

Many knowledge graph embedding (KGE) models for link prediction use powerful encoders. However, they often rely on a simple hidden vector-matrix multiplication to score subject-relation queries against candidate object entities. When the…

Artificial Intelligence · Computer Science 2025-09-30 Samy Badreddine , Emile van Krieken , Luciano Serafini

A knowledge graph (KG) is a data structure which represents entities and relations as the vertices and edges of a directed graph with edge types. KGs are an important primitive in modern machine learning and artificial intelligence.…

Artificial Intelligence · Computer Science 2021-10-20 Michael R. Douglas , Michael Simkin , Omri Ben-Eliezer , Tianqi Wu , Peter Chin , Trung V. Dang , Andrew Wood

The problem of knowledge graph (KG) reasoning has been widely explored by traditional rule-based systems and more recently by knowledge graph embedding methods. While logical rules can capture deterministic behavior in a KG they are brittle…

Artificial Intelligence · Computer Science 2020-09-24 Susheel Suresh , Jennifer Neville

Knowledge graph (KG) reasoning is becoming increasingly popular in both academia and industry. Conventional KG reasoning based on symbolic logic is deterministic, with reasoning results being explainable, while modern embedding-based…

Artificial Intelligence · Computer Science 2022-02-16 Wen Zhang , Jiaoyan Chen , Juan Li , Zezhong Xu , Jeff Z. Pan , Huajun Chen

Inferring missing links in knowledge graphs (KG) has attracted a lot of attention from the research community. In this paper, we tackle a practical query answering task involving predicting the relation of a given entity pair. We frame this…

Artificial Intelligence · Computer Science 2018-10-24 Wenhu Chen , Wenhan Xiong , Xifeng Yan , William Wang

Knowledge graph embedding models (KGEMs) developed for link prediction learn vector representations for entities in a knowledge graph, known as embeddings. A common tacit assumption is the KGE entity similarity assumption, which states that…

Artificial Intelligence · Computer Science 2024-03-29 Nicolas Hubert , Heiko Paulheim , Armelle Brun , Davy Monticolo

Knowledge graph embedding (KGE) is a technique for learning continuous embeddings for entities and relations in the knowledge graph.Due to its benefit to a variety of downstream tasks such as knowledge graph completion, question answering…

Machine Learning · Computer Science 2019-06-25 Hengtong Zhang , Tianhang Zheng , Jing Gao , Chenglin Miao , Lu Su , Yaliang Li , Kui Ren

We present MMKG, a collection of three knowledge graphs that contain both numerical features and (links to) images for all entities as well as entity alignments between pairs of KGs. Therefore, multi-relational link prediction and entity…

Artificial Intelligence · Computer Science 2019-03-14 Ye Liu , Hui Li , Alberto Garcia-Duran , Mathias Niepert , Daniel Onoro-Rubio , David S. Rosenblum

Knowledge graphs (KGs) consisting of triples are always incomplete, so it's important to do Knowledge Graph Completion (KGC) by predicting missing triples. Multi-Source KG is a common situation in real KG applications which can be viewed as…

Computation and Language · Computer Science 2020-10-27 Mingyang Chen , Wen Zhang , Zonggang Yuan , Yantao Jia , Huajun Chen

Knowledge graphs (KGs) play a crucial role in many applications, such as question answering, but incompleteness is an urgent issue for their broad application. Much research in knowledge graph completion (KGC) has been performed to resolve…

Artificial Intelligence · Computer Science 2023-01-10 Yinyu Lan , Shizhu He , Kang Liu , Jun Zhao

Knowledge graph embedding plays an important role in knowledge representation, reasoning, and data mining applications. However, for multiple cross-domain knowledge graphs, state-of-the-art embedding models cannot make full use of the data…

Machine Learning · Computer Science 2021-08-17 Hao Peng , Haoran Li , Yangqiu Song , Vincent Zheng , Jianxin Li

In recent years, we have witnessed the proliferation of knowledge graphs (KG) in various domains, aiming to support applications like question answering, recommendations, etc. A frequent task when integrating knowledge from different KGs is…

Databases · Computer Science 2023-06-08 Nikolaos Fanourakis , Vasilis Efthymiou , Dimitris Kotzinos , Vassilis Christophides

Knowledge graph embedding (KGE), which maps entities and relations in a knowledge graph into continuous vector spaces, has achieved great success in predicting missing links in knowledge graphs. However, knowledge graphs often contain…

Artificial Intelligence · Computer Science 2023-02-07 Zhen Yao , Wen Zhang , Mingyang Chen , Yufeng Huang , Yi Yang , Huajun Chen

Open Knowledge Graphs (such as DBpedia, Wikidata, YAGO) have been recognized as the backbone of diverse applications in the field of data mining and information retrieval. Hence, the completeness and correctness of the Knowledge Graphs…

Computation and Language · Computer Science 2020-05-07 Russa Biswas , Radina Sofronova , Mehwish Alam , Harald Sack

The ability of knowledge graphs to represent complex relationships at scale has led to their adoption for various needs including knowledge representation, question-answering, and recommendation systems. Knowledge graphs are often…

Computation and Language · Computer Science 2023-05-18 Jason Youn , Ilias Tagkopoulos