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Graph-based learning is a cornerstone for analyzing structured data, with node classification as a central task. However, in many real-world graphs, nodes lack informative feature vectors, leaving only neighborhood connectivity and class…

Machine Learning · Computer Science 2025-10-14 Sujan Chakraborty , Rahul Bordoloi , Anindya Sengupta , Olaf Wolkenhauer , Saptarshi Bej

A graph is a powerful concept for representation of relations between pairs of entities. Data with underlying graph structure can be found across many disciplines and there is a natural desire for understanding such data better. Deep…

Machine Learning · Computer Science 2019-01-25 Martin Simonovsky

Graph autoencoders (AE) and variational autoencoders (VAE) are powerful node embedding methods, but suffer from scalability issues. In this paper, we introduce FastGAE, a general framework to scale graph AE and VAE to large graphs with…

Machine Learning · Computer Science 2021-04-14 Guillaume Salha , Romain Hennequin , Jean-Baptiste Remy , Manuel Moussallam , Michalis Vazirgiannis

Although graph-based learning has attracted a lot of attention, graph representation learning is still a challenging task whose resolution may impact key application fields such as chemistry or biology. To this end, we introduce GRALE, a…

Machine Learning · Computer Science 2025-10-21 Paul Krzakala , Gabriel Melo , Charlotte Laclau , Florence d'Alché-Buc , Rémi Flamary

Graph representation learning has made major strides over the past decade. However, in many relational domains, the input data are not suited for simple graph representations as the relationships between entities go beyond pairwise…

Machine Learning · Computer Science 2021-01-20 Balasubramaniam Srinivasan , Da Zheng , George Karypis

Graph is a natural representation of data for a variety of real-word applications, such as knowledge graph mining, social network analysis and biological network comparison. For these applications, graph embedding is crucial as it provides…

Machine Learning · Computer Science 2020-01-24 Bitan Hou , Yujing Wang , Ming Zeng , Shan Jiang , Ole J. Mengshoel , Yunhai Tong , Jing Bai

Graph Neural Networks (GNNs) are important across different domains, such as social network analysis and recommendation systems, due to their ability to model complex relational data. This paper introduces subgraph queries as a new task for…

Machine Learning · Computer Science 2024-08-09 Erfaneh Mahmoudzadeh , Parmis Naddaf , Kiarash Zahirnia , Oliver Schulte

Masked graph autoencoder (MGAE) has emerged as a promising self-supervised graph pre-training (SGP) paradigm due to its simplicity and effectiveness. However, existing efforts perform the mask-then-reconstruct operation in the raw data…

Machine Learning · Computer Science 2023-04-07 Wenxuan Tu , Qing Liao , Sihang Zhou , Xin Peng , Chuan Ma , Zhe Liu , Xinwang Liu , Zhiping Cai

We present path2vec, a new approach for learning graph embeddings that relies on structural measures of pairwise node similarities. The model learns representations for nodes in a dense space that approximate a given user-defined graph…

Computation and Language · Computer Science 2019-04-15 Andrey Kutuzov , Mohammad Dorgham , Oleksiy Oliynyk , Chris Biemann , Alexander Panchenko

We propose to Transform Scene Graphs (TSG) into more descriptive captions. In TSG, we apply multi-head attention (MHA) to design the Graph Neural Network (GNN) for embedding scene graphs. After embedding, different graph embeddings contain…

Computer Vision and Pattern Recognition · Computer Science 2023-12-12 Xu Yang , Jiawei Peng , Zihua Wang , Haiyang Xu , Qinghao Ye , Chenliang Li , Songfang Huang , Fei Huang , Zhangzikang Li , Yu Zhang

Masked Graph Auto-Encoder, a powerful graph self-supervised training paradigm, has recently shown superior performance in graph representation learning. Existing works typically rely on node contextual information to recover the masked…

Machine Learning · Computer Science 2025-08-15 Ziyu Zheng , Yaming Yang , Ziyu Guan , Wei Zhao , Weigang Lu

We target open-world feature extrapolation problem where the feature space of input data goes through expansion and a model trained on partially observed features needs to handle new features in test data without further retraining. The…

Machine Learning · Computer Science 2023-06-14 Qitian Wu , Chenxiao Yang , Junchi Yan

Representation learning on heterogeneous graphs aims to obtain meaningful node representations to facilitate various downstream tasks, such as node classification and link prediction. Existing heterogeneous graph learning methods are…

Machine Learning · Computer Science 2022-04-19 Le Yu , Leilei Sun , Bowen Du , Chuanren Liu , Weifeng Lv , Hui Xiong

Diffusion models have established themselves as state-of-the-art generative models across various data modalities, including images and videos, due to their ability to accurately approximate complex data distributions. Unlike traditional…

Machine Learning · Computer Science 2025-10-23 Daniel Wesego

Graph structured data, specifically text-attributed graphs (TAG), effectively represent relationships among varied entities. Such graphs are essential for semi-supervised node classification tasks. Graph Neural Networks (GNNs) have emerged…

Machine Learning · Computer Science 2024-04-18 Kaiwen Dong , Zhichun Guo , Nitesh V. Chawla

Zero-shot graph machine learning, especially with graph neural networks (GNNs), has garnered significant interest due to the challenge of scarce labeled data. While methods like self-supervised learning and graph prompt learning have been…

Machine Learning · Computer Science 2024-12-20 Duo Wang , Yuan Zuo , Fengzhi Li , Junjie Wu

Graph representation learning embeds nodes in large graphs as low-dimensional vectors and is of great benefit to many downstream applications. Most embedding frameworks, however, are inherently transductive and unable to generalize to…

Machine Learning · Computer Science 2020-02-27 Huiling Zhu , Xin Luo , Hankz Hankui Zhuo

Graph representation learning has attracted a surge of interest recently, whose target at learning discriminant embedding for each node in the graph. Most of these representation methods focus on supervised learning and heavily depend on…

Machine Learning · Computer Science 2021-07-07 Pengpeng Shao , Tong Liu , Dawei Zhang , Jianhua Tao , Feihu Che , Guohua Yang

The success of graph neural networks on graph-based web mining highly relies on abundant human-annotated data, which is laborious to obtain in practice. When only few labeled nodes are available, how to improve their robustness is a key to…

Machine Learning · Computer Science 2022-12-13 Kaize Ding , Elnaz Nouri , Guoqing Zheng , Huan Liu , Ryen White

Node2vec is a graph embedding method that learns a vector representation for each node of a weighted graph while seeking to preserve relative proximity and global structure. Numerical experiments suggest Node2vec struggles to recreate the…

Machine Learning · Statistics 2023-09-18 Yasuaki Hiraoka , Yusuke Imoto , Killian Meehan , Théo Lacombe , Toshiaki Yachimura