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Given a one-dimensional shift $X$, let $|F_X(\ell)|$ be the number of follower sets of words of length $\ell$ in $X$. We call the sequence $\{|F_X(\ell)|\}_{\ell \in \mathbb{N}}$ the follower set sequence of the shift $X$. Extender sets are…

Dynamical Systems · Mathematics 2015-08-13 Thomas French

Multiple sequence alignment is a key process in today's biology, and finding a relevant alignment of several sequences is much more challenging than just optimizing some improbable evaluation functions. Our approach for addressing multiple…

Quantitative Methods · Quantitative Biology 2008-12-18 Frédéric Guinand , Yoann Pigné

Residual connections remain ubiquitous in modern neural network architectures nearly a decade after their introduction. Their widespread adoption is often credited to their dramatically improved trainability: residual networks train faster,…

Machine Learning · Computer Science 2025-06-18 Christian H. X. Ali Mehmeti-Göpel , Michael Wand

Given any two sequences of complex numbers, we establish simple relations between their binomial convolution and the binomial convolution of their individual binomial transforms. We employ these relations to derive new identities involving…

Combinatorics · Mathematics 2025-12-22 Kunle Adegoke

Sequential sensor data is generated in a wide variety of practical applications. A fundamental challenge involves learning effective classifiers for such sequential data. While deep learning has led to impressive performance gains in recent…

Machine Learning · Computer Science 2020-10-07 Nauman Ahad , Mark A. Davenport

Among the classical models for interconnection networks are hypercubes and Fibonacci cubes. Fibonacci cubes are induced subgraphs of hypercubes obtained by restricting the vertex set to those binary strings which do not contain consecutive…

Combinatorics · Mathematics 2021-01-29 Ömer Eğecioğlu , Vesna Iršič

We investigate various supersymmetric brane intersections. Motivated by the recent results on supertubes, we investigate general constraints in which parallel brane-antibrane configurations are supersymmetric. Dual descriptions of these…

High Energy Physics - Theory · Physics 2009-11-07 Robert C. Myers , David J. Winters

Transformers can generate predictions in two approaches: 1. auto-regressively by conditioning each sequence element on the previous ones, or 2. directly produce an output sequences in parallel. While research has mostly explored upon this…

Computer Vision and Pattern Recognition · Computer Science 2021-08-18 Andrea Alfieri , Yancong Lin , Jan C. van Gemert

We first show that increasing trees are in bijection with set compositions, extending simultaneously a recent result on trees due to Tonks and a classical result on increasing binary trees. We then consider algebraic structures on the…

Combinatorics · Mathematics 2007-05-23 Frederic Patras , Manfred Schocker

Gradient dynamics play a central role in determining the stability and generalization of deep neural networks. In this work, we provide an empirical analysis of how variance and standard deviation of gradients evolve during training,…

Machine Learning · Computer Science 2025-09-09 Vincent-Daniel Yun

A filter lattice is a distributive lattice formed by all filters of a poset in the anti-inclusion order. We study the combinatorial properties of the Hasse diagrams of filter lattices of certain posets, so called Fibonacci-like cubes, in…

Combinatorics · Mathematics 2019-05-03 Xuxu Zhao , Xu Wang , Haiyuan Yao

This paper uses a connection between bounded remainder sets in $\mathbb{R}^d$ and cut-and-project sets in $\mathbb{R}$ together with the fact that each one-dimensional Pisot substitution sequence is bounded distance equivalent to some…

Metric Geometry · Mathematics 2021-04-20 Dirk Frettlöh , Alexey Garber

It is well known that the set of $m$-Dyck paths with a fixed height and a fixed amount of valleys is counted by the Fu{\ss}-Narayana numbers. In this article, we consider the set of $m$-Dyck paths that start with at least $t$ north steps.…

Combinatorics · Mathematics 2023-02-07 Henri Mühle , Eleni Tzanaki

Tandem duplication is an evolutionary process whereby a segment of DNA is replicated and proximally inserted. The different configurations that can arise from this process give rise to some interesting combinatorial questions. Firstly, we…

Combinatorics · Mathematics 2016-11-25 L Penso-Dolfin , CD Greenman

We give unique recovery guarantees for matrices of bounded rank that have undergone permutations of their entries. We even do this for a more general matrix structure that we call ladder matrices. We use methods and results of commutative…

Information Theory · Computer Science 2022-07-25 Manolis C. Tsakiris

Transformer networks have lead to important progress in language modeling and machine translation. These models include two consecutive modules, a feed-forward layer and a self-attention layer. The latter allows the network to capture long…

Machine Learning · Computer Science 2019-07-03 Sainbayar Sukhbaatar , Edouard Grave , Guillaume Lample , Herve Jegou , Armand Joulin

We introduce a new family of hyperplane arrangements inspired by the homogenized Linial arrangement (which was recently introduced by Hetyei), and show that the intersection lattices of these arrangements are isomorphic to the bond lattices…

Combinatorics · Mathematics 2021-10-28 Alexander Lazar

We consider a preferential attachment random graph with self-reinforcement. Each time a new vertex comes in, it attaches itself to an old vertex with a probability that is proportional to the sum of the degrees of that old vertex at all…

Probability · Mathematics 2025-07-29 Yogesh Dahiya , Frank den Hollander

In the course of evolution, proteins undergo important changes in their amino acid sequences, while their three-dimensional folded structure and their biological function remain remarkably conserved. Thanks to modern sequencing techniques,…

Biomolecules · Quantitative Biology 2019-10-07 Simona Cocco , Christoph Feinauer , Matteo Figliuzzi , Remi Monasson , Martin Weigt

A new class of distributional transformations is introduced, characterized by equations relating function weighted expectations of test functions on a given distribution to expectations of the transformed distribution on the test function's…

Probability · Mathematics 2007-05-23 Larry Goldstein , Gesine Reinert
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