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Automatic segmentation of anatomical structures with convolutional neural networks (CNNs) constitutes a large portion of research in medical image analysis. The majority of CNN-based methods rely on an abundance of labeled data for proper…

Image and Video Processing · Electrical Eng. & Systems 2020-03-20 Cheryl Sital , Tom Brosch , Dominique Tio , Alexander Raaijmakers , Jürgen Weese

Scalable and accurate identification of specific clinical outcomes has been enabled by machine-learning applied to electronic medical record (EMR) systems. The development of classification models requires the collection of a complete…

Methodology · Statistics 2020-11-09 W. Katherine Tan , Patrick J. Heagerty

Machine learning (ML)-based analysis of electroencephalograms (EEGs) is playing an important role in advancing neurological care. However, the difficulties in automatically extracting useful metadata from clinical records hinder the…

Computation and Language · Computer Science 2021-09-14 Samarth Rawal , Yogatheesan Varatharajah

Many practical applications of AI in medicine consist of semi-supervised discovery: The investigator aims to identify features of interest at a resolution more fine-grained than that of the available human labels. This is often the scenario…

Computation and Language · Computer Science 2020-04-08 Allen Schmaltz , Andrew Beam

Deep learning enables automatic and robust extraction of cardiac function descriptors from echocardiographic sequences, such as ejection fraction or strain. These descriptors provide fine-grained information that physicians consider, in…

Computer Vision and Pattern Recognition · Computer Science 2025-08-20 Nathan Painchaud , Jérémie Stym-Popper , Pierre-Yves Courand , Nicolas Thome , Pierre-Marc Jodoin , Nicolas Duchateau , Olivier Bernard

The performance of medical image segmentation models is usually evaluated using metrics like the Dice score and Hausdorff distance, which compare predicted masks to ground truth annotations. However, when applying the model to unseen data,…

Image and Video Processing · Electrical Eng. & Systems 2025-04-23 Jingchen Zou , Jianqiang Li , Gabriel Jimenez , Qing Zhao , Daniel Racoceanu , Matias Cosarinsky , Enzo Ferrante , Guanghui Fu

Electronic health records contain inconsistently structured or free-text data, requiring efficient preprocessing to enable predictive health care models. Although artificial intelligence-driven natural language processing tools show promise…

A systematic review identifies and collates various clinical studies and compares data elements and results in order to provide an evidence based answer for a particular clinical question. The process is manual and involves lot of time. A…

Information Retrieval · Computer Science 2016-06-22 Tanmay Basu , Shraman Kumar , Abhishek Kalyan , Priyanka Jayaswal , Pawan Goyal , Stephen Pettifer , Siddhartha R. Jonnalagadda

Objective: Text mining of clinical notes embedded in electronic medical records is increasingly used to extract patient characteristics otherwise not or only partly available, to assess their association with relevant health outcomes. As…

Computation and Language · Computer Science 2023-01-18 Madhumita Sushil , Atul J. Butte , Ewoud Schuit , Maarten van Smeden , Artuur M. Leeuwenberg

We propose a general pipeline to automate the extraction of labels from radiology reports using large language models, which we validate on spinal MRI reports. The efficacy of our labelling method is measured on five distinct conditions:…

Image and Video Processing · Electrical Eng. & Systems 2024-11-08 Robin Y. Park , Rhydian Windsor , Amir Jamaludin , Andrew Zisserman

Robot-assisted catheterization has garnered a good attention for its potentials in treating cardiovascular diseases. However, advancing surgeon-robot collaboration still requires further research, particularly on task-specific automation.…

Computer Vision and Pattern Recognition · Computer Science 2025-04-15 Olatunji Mumini Omisore , Toluwanimi Akinyemi , Anh Nguyen , Lei Wang

Manual chart review remains an extremely time-consuming and resource-intensive component of clinical research, requiring experts to extract often complex information from unstructured electronic health record (EHR) narratives. We present a…

Medical decisions directly impact individuals' health and well-being. Extracting decision spans from clinical notes plays a crucial role in understanding medical decision-making processes. In this paper, we develop a new dataset called…

Computation and Language · Computer Science 2024-08-26 Mohamed Elgaar , Jiali Cheng , Nidhi Vakil , Hadi Amiri , Leo Anthony Celi

Heart sound diagnosis and classification play an essential role in detecting cardiovascular disorders, especially when the remote diagnosis becomes standard clinical practice. Most of the current work is designed for single category based…

Sound · Computer Science 2022-04-25 Li Guo , Steven Davenport , Yonghong Peng

Non-textual components such as charts, diagrams and tables provide key information in many scientific documents, but the lack of large labeled datasets has impeded the development of data-driven methods for scientific figure extraction. In…

Digital Libraries · Computer Science 2018-06-01 Noah Siegel , Nicholas Lourie , Russell Power , Waleed Ammar

Unstructured information in electronic health records provide an invaluable resource for medical research. To protect the confidentiality of patients and to conform to privacy regulations, de-identification methods automatically remove…

Computation and Language · Computer Science 2020-01-17 Jan Trienes , Dolf Trieschnigg , Christin Seifert , Djoerd Hiemstra

Automatic segmentation of the heart cavity is an essential task for the diagnosis of cardiac diseases. In this paper, we propose a semi-supervised segmentation setup for leveraging unlabeled data to segment Left-ventricle, Right-ventricle,…

Image and Video Processing · Electrical Eng. & Systems 2023-02-23 Mahyar Bolhassani , Ilkay Oksuz

Objective: To detect and classify features of stigmatizing and biased language in intensive care electronic health records (EHRs) using natural language processing techniques. Materials and Methods: We first created a lexicon and regular…

Computation and Language · Computer Science 2025-07-15 Drew Walker , Annie Thorne , Sudeshna Das , Jennifer Love , Hannah LF Cooper , Melvin Livingston , Abeed Sarker

Obtaining datasets labeled to facilitate model development is a challenge for most machine learning tasks. The difficulty is heightened for medical imaging, where data itself is limited in accessibility and labeling requires costly time and…

Computation and Language · Computer Science 2018-10-03 Nithya Attaluri , Ahmed Nasir , Carolynne Powe , Harold Racz , Ben Covington , Li Yao , Jordan Prosky , Eric Poblenz , Tobi Olatunji , Kevin Lyman

The extraction and analysis of insights from medical data, primarily stored in free-text formats by healthcare workers, presents significant challenges due to its unstructured nature. Medical coding, a crucial process in healthcare, remains…

Computation and Language · Computer Science 2024-05-28 Mikhail Kulyabin , Gleb Sokolov , Aleksandr Galaida , Andreas Maier , Tomas Arias-Vergara