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Compared to the general news domain, information extraction (IE) from biomedical text requires much broader domain knowledge. However, many previous IE methods do not utilize any external knowledge during inference. Due to the exponential…

Computation and Language · Computer Science 2021-06-02 Tuan Lai , Heng Ji , ChengXiang Zhai , Quan Hung Tran

Multimedia Event Extraction (MEE) aims to identify events and their arguments from documents that contain both text and images. It requires grounding event semantics across different modalities. Progress in MEE is limited by the lack of…

Computation and Language · Computer Science 2026-05-28 Yongkang Jin , Jianwen Luo , Jingjing Wang , Jianmin Yao , Yu Hong

Event extraction (EE) has considerably benefited from pre-trained language models (PLMs) by fine-tuning. However, existing pre-training methods have not involved modeling event characteristics, resulting in the developed EE models cannot…

Computation and Language · Computer Science 2021-06-01 Ziqi Wang , Xiaozhi Wang , Xu Han , Yankai Lin , Lei Hou , Zhiyuan Liu , Peng Li , Juanzi Li , Jie Zhou

Constructing large-scaled medical knowledge graphs can significantly boost healthcare applications for medical surveillance, bring much attention from recent research. An essential step in constructing large-scale MKG is extracting…

Computer Vision and Pattern Recognition · Computer Science 2021-10-27 Jialun Wu , Yang Liu , Zeyu Gao , Tieliang Gong , Chunbao Wang , Chen Li

We tackle the nested and overlapping event detection task and propose a novel search-based neural network (SBNN) structured prediction model that treats the task as a search problem on a relation graph of trigger-argument structures. Unlike…

Computation and Language · Computer Science 2019-10-28 Kurt Espinosa , Makoto Miwa , Sophia Ananiadou

Scientific information extraction (SciIE) has primarily relied on entity-relation extraction in narrow domains, limiting its applicability to interdisciplinary research and struggling to capture the necessary context of scientific…

Computation and Language · Computer Science 2025-09-22 Bofu Dong , Pritesh Shah , Sumedh Sonawane , Tiyasha Banerjee , Erin Brady , Xinya Du , Ming Jiang

Structural extraction of events within discourse is critical since it avails a deeper understanding of communication patterns and behavior trends. Event argument extraction (EAE), at the core of event-centric understanding, is the task of…

Computation and Language · Computer Science 2025-03-21 Xinliang Frederick Zhang , Carter Blum , Temma Choji , Shalin Shah , Alakananda Vempala

Document-level event extraction is a long-standing challenging information retrieval problem involving a sequence of sub-tasks: entity extraction, event type judgment, and event type-specific multi-event extraction. However, addressing the…

Computation and Language · Computer Science 2023-07-03 Qizhi Wan , Changxuan Wan , Keli Xiao , Hui Xiong , Dexi Liu , Xiping Liu

We propose a knowledge-based approach for extraction of Cause-Effect (CE) relations from biomedical text. Our approach is a combination of an unsupervised machine learning technique to discover causal triggers and a set of high-precision…

Computation and Language · Computer Science 2021-03-11 Sachin Pawar , Ravina More , Girish K. Palshikar , Pushpak Bhattacharyya , Vasudeva Varma

Biomedical entity linking maps textual mentions to concepts in structured knowledge bases such as UMLS or SNOMED CT. Most existing systems link each mention independently, using only the mention or its surrounding sentence. This ignores…

Computation and Language · Computer Science 2026-05-14 Adam Remaki , Xavier Tannier , Christel Gérardin

Key information extraction (KIE) from scanned documents has gained increasing attention because of its applications in various domains. Although promising results have been achieved by some recent KIE approaches, they are usually built…

Computation and Language · Computer Science 2023-10-26 Panfeng Cao , Ye Wang , Qiang Zhang , Zaiqiao Meng

Modern high-stakes systems, such as healthcare or robotics, often generate vast streaming event sequences. Our goal is to design an efficient, plug-and-play tool to elicit logic tree-based explanations from Large Language Models (LLMs) to…

Machine Learning · Computer Science 2024-07-01 Zitao Song , Chao Yang , Chaojie Wang , Bo An , Shuang Li

Document-Level Biomedical Relation Extraction (Bio-RE) aims to identify relations between biomedical entities within extensive texts, serving as a crucial subfield of biomedical text mining. Existing Bio-RE methods struggle with…

Computation and Language · Computer Science 2025-01-10 Yufei Shang , Yanrong Guo , Shijie Hao , Richang Hong

Adverse Events (AE) are harmful events resulting from the use of medical products. Although social media may be crucial for early AE detection, the sheer scale of this data makes it logistically intractable to analyze using human agents,…

Computation and Language · Computer Science 2021-09-14 Shivam Raval , Hooman Sedghamiz , Enrico Santus , Tuka Alhanai , Mohammad Ghassemi , Emmanuele Chersoni

With the rapid development of large language models (LLMs), more and more researchers have paid attention to information extraction based on LLMs. However, there are still some spaces to improve in the existing related methods. First,…

Computation and Language · Computer Science 2026-03-24 Jiang Liu , Ge Qiu , Hao Fei , Dongdong Xie , Jinbo Li , Fei Li , Chong Teng , Donghong Ji

Process model extraction (PME) is a recently emerged interdiscipline between natural language processing (NLP) and business process management (BPM), which aims to extract process models from textual descriptions. Previous process…

Computation and Language · Computer Science 2020-03-23 Chen Qian , Lijie Wen , Akhil Kumar , Leilei Lin , Li Lin , Zan Zong , Shuang Li , Jianmin Wang

Contextual Relation Extraction (CRE) is mainly used for constructing a knowledge graph with a help of ontology. It performs various tasks such as semantic search, query answering, and textual entailment. Relation extraction identifies the…

Computation and Language · Computer Science 2023-09-14 R. Priyadharshini , G. Jeyakodi , P. Shanthi Bala

Joint event and causality extraction is a challenging yet essential task in information retrieval and data mining. Recently, pre-trained language models (e.g., BERT) yield state-of-the-art results and dominate in a variety of NLP tasks.…

Computation and Language · Computer Science 2021-02-22 Zijian Wang , Hao Wang , Xiangfeng Luo , Jianqi Gao

The diverse relationships among real-world events, including coreference, temporal, causal, and subevent relations, are fundamental to understanding natural languages. However, two drawbacks of existing datasets limit event relation…

Computation and Language · Computer Science 2022-11-15 Xiaozhi Wang , Yulin Chen , Ning Ding , Hao Peng , Zimu Wang , Yankai Lin , Xu Han , Lei Hou , Juanzi Li , Zhiyuan Liu , Peng Li , Jie Zhou

Recent advances in machine learning have significantly impacted the field of information extraction, with Language Models (LMs) playing a pivotal role in extracting structured information from unstructured text. Prior works typically…

Computation and Language · Computer Science 2024-10-03 Haolun Wu , Ye Yuan , Liana Mikaelyan , Alexander Meulemans , Xue Liu , James Hensman , Bhaskar Mitra