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In this dissertation we develop a new formal graphical framework for causal reasoning. Starting with a review of monoidal categories and their associated graphical languages, we then revisit probability theory from a categorical perspective…

Probability · Mathematics 2013-01-29 Brendan Fong

Algebraic effects offer a versatile framework that covers a wide variety of effects. However, the family of operations that delimit scopes are not algebraic and are usually modelled as handlers, thus preventing them from being used freely…

Programming Languages · Computer Science 2022-01-26 Zhixuan Yang , Marco Paviotti , Nicolas Wu , Birthe van den Berg , Tom Schrijvers

This work provides the first unifying theoretical framework for node (positional) embeddings and structural graph representations, bridging methods like matrix factorization and graph neural networks. Using invariant theory, we show that…

Machine Learning · Computer Science 2020-09-23 Balasubramaniam Srinivasan , Bruno Ribeiro

The present article is the first of a series whose goal is to define a logical formalism in which it is possible to reason about genetics. In this paper, we introduce the main concepts of our language whose domain of discourse consists of a…

Category Theory · Mathematics 2020-04-07 Rémy Tuyéras

Graph-structured data appears frequently in domains including chemistry, natural language semantics, social networks, and knowledge bases. In this work, we study feature learning techniques for graph-structured inputs. Our starting point is…

Machine Learning · Computer Science 2017-09-26 Yujia Li , Daniel Tarlow , Marc Brockschmidt , Richard Zemel

Probabilistic sentential decision diagrams are a class of structured-decomposable probabilistic circuits especially designed to embed logical constraints. To adapt the classical LearnSPN scheme to learn the structure of these models, we…

Artificial Intelligence · Computer Science 2021-07-27 Alessandro Antonucci , Alessandro Facchini , Lilith Mattei

A notion of morphism that is suitable for the sheaf-theoretic approach to contextuality is developed, resulting in a resource theory for contextuality. The key features involve using an underlying relation rather than a function between…

Quantum Physics · Physics 2019-01-30 Martti Karvonen

The flexibility and effectiveness of message passing based graph neural networks (GNNs) induced considerable advances in deep learning on graph-structured data. In such approaches, GNNs recursively update node representations based on their…

Machine Learning · Computer Science 2023-05-04 Yeskendir Koishekenov , Erik J. Bekkers

We present an approach to develop folds for nested data types using dependent types. We call such folds $\textit{dependently typed folds}$, they have the following properties. (1) Dependently typed folds are defined by well-founded…

Logic in Computer Science · Computer Science 2018-06-18 Peng Fu , Peter Selinger

Causality plays an important role in understanding intelligent behavior, and there is a wealth of literature on mathematical models for causality, most of which is focused on causal graphs. Causal graphs are a powerful tool for a wide range…

Artificial Intelligence · Computer Science 2024-12-23 Scott Garrabrant , Matthias Georg Mayer , Magdalena Wache , Leon Lang , Sam Eisenstat , Holger Dell

Bayesian networks faithfully represent the symmetric conditional independences existing between the components of a random vector. Staged trees are an extension of Bayesian networks for categorical random vectors whose graph represents…

Machine Learning · Statistics 2022-03-10 Manuele Leonelli , Gherardo Varando

The reverse engineering problem with probabilities and sequential behavior is introducing here, using the expression of an algorithm. The solution is partially founded, because we solve the problem only if we have a Probabilistic Sequential…

Dynamical Systems · Mathematics 2007-08-13 Maria A. Avino-Diaz

The primary goal of this paper is to abstract notions, results and constructions from the theory of categories to the broader setting of plots. Loosely speaking, a plot can be thought of as a non-associative non-unital category with a…

Category Theory · Mathematics 2016-04-06 Salvatore Tringali

Real-world networks exhibit prominent hierarchical and modular structures, with various subgraphs as building blocks. Most existing studies simply consider distinct subgraphs as motifs and use only their numbers to characterize the…

Social and Information Networks · Computer Science 2019-12-17 Qi Xuan , Jinhuan Wang , Minghao Zhao , Junkun Yuan , Chenbo Fu , Zhongyuan Ruan , Guanrong Chen

We introduce structured decompositions, category-theoretic structures which simultaneously generalize notions from graph theory (including treewidth, layered treewidth, co-treewidth, graph decomposition width, tree independence number,…

Category Theory · Mathematics 2025-05-21 Benjamin Merlin Bumpus , Zoltan A. Kocsis , Jade Edenstar Master , Emilio Minichiello

Graph classification aims to categorise graphs based on their structure and node attributes. In this work, we propose to tackle this task using tools from graph signal processing by deriving spectral features, which we then use to design…

Machine Learning · Computer Science 2023-06-07 Felix L. Opolka , Yin-Cong Zhi , Pietro Liò , Xiaowen Dong

Automated theorem proving in first-order logic is an active research area which is successfully supported by machine learning. While there have been various proposals for encoding logical formulas into numerical vectors -- from simple…

Artificial Intelligence · Computer Science 2020-03-17 Ibrahim Abdelaziz , Veronika Thost , Maxwell Crouse , Achille Fokoue

We introduce the Graph Mixture Density Networks, a new family of machine learning models that can fit multimodal output distributions conditioned on graphs of arbitrary topology. By combining ideas from mixture models and graph…

Machine Learning · Computer Science 2021-06-28 Federico Errica , Davide Bacciu , Alessio Micheli

This article is first in a series of papers where we reprove the statements in constructing the Enhanced Operation Map and the abstract six-functor formalism developed by Liu-Zheng. In this paper, we prove a theorem regarding constructing…

Algebraic Geometry · Mathematics 2025-01-28 Chirantan Chowdhury

We develop a representation theory of categories as a means to explore characteristic structures in algebra. Characteristic structures play a critical role in isomorphism testing of groups and algebras, and their construction and…

Group Theory · Mathematics 2025-11-20 Peter A. Brooksbank , Heiko Dietrich , Joshua Maglione , E. A. O'Brien , James B. Wilson
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