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Synchronization in a lattice of a finite population of phase oscillators with algebraically decaying, non-normalized coupling is studied by numerical simulations. A critical level of decay is found, below which full locking takes place if…

Statistical Mechanics · Physics 2009-11-07 M. Maródi , F. d'Ovidio , T. Vicsek

Many biological, physical, and social interactions have a particular dependence on where they take place. In living cells, protein movement between the nucleus and cytoplasm affects cellular response (i.e., proteins must be present in the…

Molecular Networks · Quantitative Biology 2012-10-11 Heather A. Harrington , Elisenda Feliu , Carsten Wiuf , Michael M. P. Stumpf

Two identical van der Pol oscillators with mutual inhibition are considered as a conceptual framework for modeling a latching mechanism for cell cycle regulation. In particular, the oscillators are biased to a latched state in which there…

Dynamical Systems · Mathematics 2024-12-13 Punit Gandhi , Yangyang Wang

Proper vertebrae formation relies on a tissue-wide oscillator called the segmentation clock. Individual cellular oscillators in the presomitic mesoderm are modulated by intercellular coupling and external signals, leading to the propagation…

Molecular Networks · Quantitative Biology 2024-05-27 Paul François , Victoria Mochulska

The theory of mixed-feedback systems provides an effective framework for the design of robust and tunable oscillations in nonlinear systems characterized by interleaved fast positive and slow negative feedback loops. The goal of this paper…

Dynamical Systems · Mathematics 2024-12-11 Omar Juarez-Alvarez , Alessio Franci

Small inhibitory neuronal circuits have long been identified as key neuronal motifs to generate and modulate the coexisting rhythms of various motor functions. Our paper highlights the role of a cellular switching mechanism to orchestrate…

Neurons and Cognition · Quantitative Biology 2018-02-20 Guillaume Drion , Alessio Franci , Rodolphe Sepulchre

Social behavior is a complex integrative function that entails many aspects of the brain's sensory, cognitive, emotional and motor capacities. Neural processes are seldom simultaneous but occur according to precise temporal and coordinative…

Neurons and Cognition · Quantitative Biology 2020-05-11 Emmanuelle Tognoli , J. A. Scott Kelso

We study synaptically coupled neuronal networks to identify the role of coupling delays in network's synchronized behaviors. We consider a network of excitable, relaxation oscillator neurons where two distinct populations, one excitatory…

Neurons and Cognition · Quantitative Biology 2018-01-01 Hwayeon Ryu , Sue Ann Campbell

The increasing number of recording electrodes enhances the capability of capturing the network's cooperative activity, however, using too many monitors might alter the properties of the measured neural network and induce noise. Using a…

Neurons and Cognition · Quantitative Biology 2023-04-24 Roni Vardi , Amir Goldental , Shira Sardi , Anton Sheinin , Ido Kanter

In the brain, coherent neuronal activities often appear simultaneously in multiple frequency bands, e.g., as combinations of alpha (8-12 Hz), beta (12.5-30 Hz), gamma (30-120 Hz) oscillations, among others. These rhythms are believed to…

Neurons and Cognition · Quantitative Biology 2023-04-26 Tianyi Wu , Yuhang Cai , Ruilin Zhang , Zhongyi Wang , Louis Tao , Zhuo-Cheng Xiao

A wide range of organisms use circadian clocks to keep internal sense of daily time and regulate their behavior accordingly. Most of these clocks use intracellular genetic networks based on positive and negative regulatory elements. The…

Biological Physics · Physics 2009-11-07 Jose M. G. Vilar , Hao Yuan Kueh , Naama Barkai , Stanislas Leibler

The formation and dissociation of specific noncovalent interactions between a variety of macromolecules play a crucial role in the function of biological systems. During the last few years, three main lines of research led to a dramatic…

Biological Physics · Physics 2009-11-13 Pierre Bongrand

Quantum statistics and symmetrization dictate that identical fermions do not interact via s-wave collisions. However, in the presence of spin-orbit coupling (SOC), fermions prepared in identical internal states with distinct momenta become…

Atomic Physics · Physics 2018-05-09 S. L. Bromley , S. Kolkowitz , T. Bothwell , D. Kedar , A. Safavi-Naini , M. L. Wall , C. Salomon , A. M. Rey , J. Ye

A system of four coupled oscillators that exhibits unusual synchronization phenomena has been ana- lyzed. Existence of a one-way heteroclinic network, called heteroclinic ratchet, gives rise to uni-directional (de)synchronization between…

Adaptation and Self-Organizing Systems · Physics 2015-05-05 Özkan Karabacak

Coordinated responses to environmental stimuli are critical for multicellular organisms. To overcome the obstacles of cell-to-cell heterogeneity and noisy signaling dynamics within individual cells, cells must effectively exchange…

Biological Physics · Physics 2022-10-12 Guanyu Li , Ryan LeFebre , Alia Starman , Patrick Chappell , Andrew Mugler , Bo Sun

Complexity in the temporal organization of neural systems may be a reflection of the diversity of its neural constituents. These constituents, excitatory and inhibitory neurons, comprise an invariant ratio in vivo and form the substrate for…

Neurons and Cognition · Quantitative Biology 2015-05-18 Xin Chen , Rhonda Dzakpasu

We have demonstrated a new photonic structure to achieve strong optical coupling between nanoparticle and photonic molecule by utilizing a notched micro ring resonators. By creating a notch in the ring resonator and putting a nanoparticle…

Optics · Physics 2015-05-19 S. Wang , K. Broderick , H. Smith , Y. Yi

Groups of eukaryotic cilia and flagella are capable of coordinating their beating over large scales, routinely exhibiting collective dynamics in the form of metachronal waves. The origin of this behaviour -- possibly influenced by both…

Soft Condensed Matter · Physics 2015-05-12 Douglas R. Brumley , Marco Polin , Timothy J. Pedley , Raymond E. Goldstein

Biological systems can rely on collective formation of a metachronal wave in an ensemble of oscillators for locomotion and for fluid transport. We consider one-dimensional chains of phase oscillators with nearest neighbor interactions,…

Biological Physics · Physics 2023-03-15 A. C. Quillen

Intracellular signaling often arises from ligand-induced oligomerization of cell surface receptors. This oligomerization or clustering process is fundamentally a cooperative behavior between near-neighbor receptor molecules; the properties…

Soft Condensed Matter · Physics 2009-10-31 Chinlin Guo , Herbert Levine