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We consider codes over fixed alphabets against worst-case symbol deletions. For any fixed $k \ge 2$, we construct a family of codes over alphabet of size $k$ with positive rate, which allow efficient recovery from a worst-case deletion…

Information Theory · Computer Science 2016-03-02 Boris Bukh , Venkatesan Guruswami , Johan Håstad

Motivated by applications to DNA-storage, flash memory, and magnetic recording, we study perfect burst-correcting codes for the limited-magnitude error channel. These codes are lattices that tile the integer grid with the appropriate error…

Information Theory · Computer Science 2022-01-06 Hengjia Wei , Moshe Schwartz

Codes for correcting sticky insertions/deletions and limited-magnitude errors have attracted significant attention due to their applications of flash memories, racetrack memories, and DNA data storage systems. In this paper, we first…

Information Theory · Computer Science 2023-02-07 Shuche Wang , Van Khu Vu , Vincent Y. F. Tan

In this paper, we investigate binary reconstruction codes capable of correcting one deletion and one substitution. We define the \emph{single-deletion single-substitution ball} function $ \mathcal{B} $ as a mapping from a sequence to the…

Information Theory · Computer Science 2025-05-08 Yuling Li , Yubo Sun , Gennian Ge

In recent years, the emergence of DNA storage systems has led to a widespread focus on the research of codes correcting insertions, deletions, and classic substitutions. During the initial investigation, Levenshtein discovered the VT codes…

Information Theory · Computer Science 2024-01-23 Yuhang Pi , Zhifang Zhang

Motivated by DNA storage in living organisms, and by known biological mutation processes, we study the reverse-complement string-duplication system. We fully classify the conditions under which the system has full expressiveness, for all…

Information Theory · Computer Science 2021-12-23 Eyar Ben-Tolila , Moshe Schwartz

This paper presents a new construction of error correcting codes which achieves optimal recovery of a streaming source over a packet erasure channel. The channel model considered is the sliding window erasure model, with burst and arbitrary…

Information Theory · Computer Science 2019-04-23 Damian Dudzicz , Silas L. Fong , Ashish Khisti

Nanopore sequencing, superior to other sequencing technologies for DNA storage in multiple aspects, has recently attracted considerable attention. Its high error rates, however, demand thorough research on practical and efficient coding…

Information Theory · Computer Science 2024-06-21 Anisha Banerjee , Yonatan Yehezkeally , Antonia Wachter-Zeh , Eitan Yaakobi

This paper studies \emph{linear} and \emph{affine} error-correcting codes for correcting synchronization errors such as insertions and deletions. We call such codes linear/affine insdel codes. Linear codes that can correct even a single…

Information Theory · Computer Science 2022-07-22 Kuan Cheng , Venkatesan Guruswami , Bernhard Haeupler , Xin Li

The repetition code is an important primitive for the techniques of quantum error correction. Here we implement repetition codes of at most $15$ qubits on the $16$ qubit \emph{ibmqx3} device. Each experiment is run for a single round of…

Quantum Physics · Physics 2018-08-31 James R. Wootton , Daniel Loss

We give a complete answer to the following basic question: "What is the maximal fraction of deletions or insertions tolerable by $q$-ary list-decodable codes with non-vanishing information rate?" This question has been open even for binary…

Information Theory · Computer Science 2020-05-05 Venkatesan Guruswami , Bernhard Haeupler , Amirbehshad Shahrasbi

The performance of Reed--Solomon codes (RS codes, for short) in the presence of insertion and deletion errors has attracted growing attention in recent literature. In this work, we further study this intriguing mathematical problem,…

Information Theory · Computer Science 2025-09-09 Peter Beelen , Roni Con , Anina Gruica , Maria Montanucci , Eitan Yaakobi

The substring edit error is the operation of replacing a substring $u$ of $x$ with another string $v$, where the lengths of $u$ and $v$ are bounded by a given constant $k$. It encompasses localized insertions, deletions, and substitutions…

Information Theory · Computer Science 2025-07-21 Yuting Li , Yuanyuan Tang , Hao Lou , Ryan Gabrys , Farzad Farnoud

We construct deletion error-correcting codes in the oblivious model, where errors are adversarial but oblivious to the encoder's randomness. Oblivious errors bridge the gap between the adversarial and random error models, and are motivated…

Information Theory · Computer Science 2025-06-24 Roni Con , Ray Li

We report new construction of nine-qubit error-correcting code, which introduces two new nine-qubit codes and one new three-qubit code. Because both the new two nine-qubit codes have the normal logical operators, as opposed to the…

Quantum Physics · Physics 2021-11-16 Long Huang , Xiaohua Wu

The noise model of deletions poses significant challenges in coding theory, with basic questions like the capacity of the binary deletion channel still being open. In this paper, we study the harder model of worst-case deletions, with a…

Information Theory · Computer Science 2014-11-26 Venkatesan Guruswami , Carol Wang

The problem of designing codes for deletion-correction and synchronization has received renewed interest due to applications in DNA-based data storage systems that use nanopore sequencers as readout platforms. In almost all instances,…

Information Theory · Computer Science 2026-05-26 Yuan-Pon Chen , Olgica Milenkovic , João Ribeiro , Jin Sima

MDS codes are erasure-correcting codes that can correct the maximum number of erasures for a given number of redundancy or parity symbols. If an MDS code has $r$ parities and no more than $r$ erasures occur, then by transmitting all the…

Information Theory · Computer Science 2014-11-25 Zhiying Wang , Itzhak Tamo , Jehoshua Bruck

Motivated by the sequence reconstruction problem initiated by Levenshtein, reconstruction codes were introduced by Cai \emph{et al}. to combat errors when a fixed number of noisy channels are available. The central problem on this topic is…

Information Theory · Computer Science 2022-07-05 Rongsheng Wu , Xiande Zhang

Codes for storage systems aim to minimize the repair locality, which is the number of disks (or nodes) that participate in the repair of a single failed disk. Simultaneously, the code must sustain a high rate, operate on a small finite…

Information Theory · Computer Science 2016-09-29 Sreechakra Goparaju , Robert Calderbank