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Lately, deep learning has been extensively investigated for accelerating dynamic magnetic resonance (MR) imaging, with encouraging progresses achieved. However, without fully sampled reference data for training, current approaches may have…

Image and Video Processing · Electrical Eng. & Systems 2022-08-09 Juan Zou , Cheng Li , Sen Jia , Ruoyou Wu , Tingrui Pei , Hairong Zheng , Shanshan Wang

The Magnetic Resonance Fingerprinting (MRF) approach aims to estimate multiple MR or physiological parameters simultaneously with a single fast acquisition sequence. Most of the MRF studies proposed so far have used simple MR sequence types…

Neurons and Cognition · Quantitative Biology 2024-07-16 Antoine Barrier , Thomas Coudert , Aurélien Delphin , Benjamin Lemasson , Thomas Christen

High spatiotemporal resolution dynamic magnetic resonance imaging (MRI) is a powerful clinical tool for imaging moving structures as well as to reveal and quantify other physical and physiological dynamics. The low speed of MRI necessitates…

Image and Video Processing · Electrical Eng. & Systems 2019-10-14 Yuhua Chen , Jaime L. Shaw , Yibin Xie , Debiao Li , Anthony G. Christodoulou

Accelerated multi-coil magnetic resonance imaging reconstruction has seen a substantial recent improvement combining compressed sensing with deep learning. However, most of these methods rely on estimates of the coil sensitivity profiles,…

Signal Processing · Electrical Eng. & Systems 2021-04-13 Marius Arvinte , Sriram Vishwanath , Ahmed H. Tewfik , Jonathan I. Tamir

Magnetic resonance imaging (MRI) is one of the noninvasive imaging modalities that can produce high-quality images. However, the scan procedure is relatively slow, which causes patient discomfort and motion artifacts in images. Accelerating…

Image and Video Processing · Electrical Eng. & Systems 2023-01-18 Samira Vafay Eslahi , Jian Tao , Jim Ji

The combination of the sparse sampling and the low-rank structured matrix reconstruction has shown promising performance, enabling a significant reduction of the magnetic resonance imaging data acquisition time. However, the low-rank…

Image and Video Processing · Electrical Eng. & Systems 2021-07-27 Xinlin Zhang , Hengfa Lu , Di Guo , Zongying Lai , Huihui Ye , Xi Peng , Bo Zhao , Xiaobo Qu

To realize Quantitative MRI (QMRI) with clinically acceptable scan time, acceleration factors achieved by conventional parallel imaging techniques are often inadequate. Further acceleration is possible using model-based reconstruction. We…

Signal Processing · Electrical Eng. & Systems 2022-02-23 Riwaj Byanju , Stefan Klein , Alexandra Cristobal-Huerta , J. A. Hernandez-Tamames , Dirk H. J. Poot

We explore the application of concepts developed in High Energy Physics (HEP) for advanced medical data analysis. Our study case is a problem with high social impact: clinically-feasible Magnetic Resonance Fingerprinting (MRF). MRF is a…

We propose a dictionary-matching-free pipeline for multi-parametric quantitative MRI image computing. Our approach has two stages based on compressed sensing reconstruction and deep learned quantitative inference. The reconstruction phase…

Computer Vision and Pattern Recognition · Computer Science 2020-04-23 Mohammad Golbabaee , Guido Buonincontri , Carolin Pirkl , Marion Menzel , Bjoern Menze , Mike Davies , Pedro Gomez

In Magnetic Resonance Imaging (MRI) data samples are collected in the spatial frequency domain (k-space), typically by time-consuming line-by-line scanning on a Cartesian grid. Scans can be accelerated by simultaneous acquisition of data…

Medical Physics · Physics 2015-03-24 Vivek Athalye , Michael Lustig , Martin Uecker

Multi-contrast MRI images provide complementary contrast information about the characteristics of anatomical structures and are commonly used in clinical practice. Recently, a multi-flip-angle (FA) and multi-echo GRE method (MULTIPLEX MRI)…

Image and Video Processing · Electrical Eng. & Systems 2021-05-19 Eric Z. Chen , Yongquan Ye , Xiao Chen , Jingyuan Lyu , Zhongqi Zhang , Yichen Hu , Terrence Chen , Jian Xu , Shanhui Sun

Magnetic Resonance Imaging (MRI) stands as a powerful modality in clinical diagnosis. However, it is known that MRI faces challenges such as long acquisition time and vulnerability to motion-induced artifacts. Despite the success of many…

Image and Video Processing · Electrical Eng. & Systems 2023-10-17 Lixuan Chen , Xuanyu Tian , Jiangjie Wu , Ruimin Feng , Guoyan Lao , Yuyao Zhang , Hongjiang Wei

While typical qualitative T1-weighted magnetic resonance images reflect scanner and protocol differences, quantitative T1 mapping aims to measure T1 independent of these effects. Changes in T1 in the brain reflect structural changes in…

Magnetic resonance imaging (MRI) nowadays serves as an important modality for diagnostic and therapeutic guidance in clinics. However, the {\it slow acquisition} process, the dynamic deformation of organs, as well as the need for {\it…

Machine Learning · Computer Science 2016-09-15 Morteza Mardani , Georgios B. Giannakis , Kamil Ugurbil

Recovering the T2 distribution from multi-echo T2 magnetic resonance (MR) signals is challenging but has high potential as it provides biomarkers characterizing the tissue micro-structure, such as the myelin water fraction (MWF). In this…

Purpose: Parallel imaging and compressed sensing reconstructions of large MRI datasets often have a prohibitive computational cost that bottlenecks clinical deployment, especially for 3D non-Cartesian acquisitions. One common approach is to…

Image and Video Processing · Electrical Eng. & Systems 2023-10-13 Julio A. Oscanoa , Frank Ong , Siddharth S. Iyer , Zhitao Li , Christopher M. Sandino , Batu Ozturkler , Daniel B. Ennis , Mert Pilanci , Shreyas S. Vasanawala

Purpose: To develop a method for rapid sub-millimeter T1, T2, T2* and QSM mapping in a single scan using multi-contrast Learned Acquisition and Reconstruction Optimization (mcLARO). Methods: A pulse sequence was developed by interleaving…

Image and Video Processing · Electrical Eng. & Systems 2023-11-28 Jinwei Zhang , Thanh D. Nguyen , Eddy Solomon , Chao Li , Qihao Zhang , Jiahao Li , Hang Zhang , Pascal Spincemaille , Yi Wang

Neural networks are rapidly gaining popularity in scientific research, but training the models is often very time-consuming. Particularly when the training data samples are large high-dimensional arrays, efficient training methodologies…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-30 Kewei Wang , Claire Songhyun Lee , Sunwoo Lee , Vishu Gupta , Jan Balewski , Alex Sim , Peter Nugent , Ankit Agrawal , Alok Choudhary , Kesheng Wu , Wei-keng Liao

Acquisition of Magnetic Resonance Imaging (MRI) scans can be accelerated by under-sampling in k-space (i.e., the Fourier domain). In this paper, we consider the problem of optimizing the sub-sampling pattern in a data-driven fashion. Since…

Image and Video Processing · Electrical Eng. & Systems 2019-05-02 Cagla Deniz Bahadir , Adrian V. Dalca , Mert R. Sabuncu

Modern deep neural networks must demonstrate state-of-the-art accuracy while exhibiting low latency and energy consumption. As such, neural architecture search (NAS) algorithms take these two constraints into account when generating a new…

Machine Learning · Computer Science 2022-05-26 Saad Abbasi , Alexander Wong , Mohammad Javad Shafiee