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We present a modelling framework, and basic model parameterization, for the study of DNA origami folding at the level of DNA domains. Our approach is explicitly kinetic and does not assume a specific folding pathway. The binding of each…

Kirigami patterned materials have found several applications in recent years due to their ability to assume complicated shapes and exhibit emergent physical properties when exposed to external forces. Consisting of an array of cuts in a…

Fluid Dynamics · Physics 2023-11-17 Adrian G. Carleton , Yahya Modarres-Sadeghi

We study the geometrically nonlinear behavior of uniformly compressed tensegrity prisms, through fully elastic and rigid--elastic models. The presented models predict a variety of mechanical behaviors in the regime of large displacements,…

Materials Science · Physics 2015-06-19 Fernando Fraternali , Gerardo Carpentieri , Ada Amendola

In this paper we focus on the mechanical properties of oligomeric glasses (waxes), employing a microscopic model that provides, via numerical simulations, information about the shear modulus of such materials, the failure mechanism via…

Soft Condensed Matter · Physics 2015-06-22 Oleg Gendelman , H. George E. Hentschel , Pankaj K. Mishra , Itamar Procaccia , Jacques Zylberg

Human joint dynamic stiffness plays an important role in the stability of performance augmentation exoskeletons. In this paper, we consider a new frequency domain model of the human joint dynamics which features a complex value stiffness.…

Robotics · Computer Science 2020-05-04 Binghan He , Huang Huang , Gray C. Thomas , Luis Sentis

Thin elastic sheets bend easily and, if they are patterned with cuts, can deform in sophisticated ways. Here we show that carefully tuning the location and arrangement of cuts within thin sheets enables the design of mechanical actuators…

This paper presents a shape-theoretic framework for dynamical analysis of nonlinear dynamical systems which appear frequently in several video-based inference tasks. Traditional approaches to dynamical modeling have included linear and…

Computer Vision and Pattern Recognition · Computer Science 2016-11-17 Vinay Venkataraman , Pavan Turaga

As we enter the age of designer matter - where objects can morph and change shape on command - what tools do we need to create shape-shifting structures? At the heart of an elastic deformation is the combination of dilation and distortion,…

Soft Condensed Matter · Physics 2018-09-14 Douglas P. Holmes

This paper presents a proposal of a rather new type of effective interatomic interaction for molecular dynamics and similar applications. The model consists of atoms with prescribed geometric arrangement of active orbitals, represented by…

Chemical Physics · Physics 2009-10-19 Ladislav Kocbach , Suhail Lubbad

In this work, we show that a recently proposed method for experimental nonlinear modal analysis based on the extended periodic motion concept is well suited to extract modal properties for strongly nonlinear systems (i.e. in the presence of…

Systems and Control · Electrical Eng. & Systems 2020-11-18 Maren Scheel , Tobias Weigele , Malte Krack

Following on Part I of this work series on local kirigami mechanics, we present a study of a discretely creased mechanism as a model to investigate the mechanics of the basic geometric building block of kirigami--the e-cone. We consider an…

Soft Condensed Matter · Physics 2022-03-14 Souhayl Sadik , Martin G. Walker , Marcelo A. Dias

We show how coarse-grained modelling combined with umbrella sampling using distance-based order parameters can be applied to compute the free-energy landscapes associated with mechanical deformations of large DNA nanostructures. We…

Soft Condensed Matter · Physics 2022-02-21 Chak Kui Wong , Chuyan Tang , John S. Schreck , Jonathan P. K. Doye

Rigid bodies, plastic impact, persistent contact, Coulomb friction, and massless limbs are ubiquitous simplifications introduced to reduce the complexity of mechanics models despite the obvious physical inaccuracies that each incurs…

Robotics · Computer Science 2020-07-31 Aaron M. Johnson , Samuel A. Burden , Daniel E. Koditschek

The Kuramoto model for an ensemble of coupled oscillators provides a paradigmatic example of non-equilibrium transitions between an incoherent and a synchronized state. Here we analyze populations of almost identical oscillators in…

Disordered Systems and Neural Networks · Physics 2013-05-30 Luce Prignano , Albert Diaz Guilera

Fully soft bistable mechanisms have shown extensive applications ranging from soft robotics, wearable devices, and medical tools, to energy harvesting. However, the lack of design and fabrication methods that are easy and potentially…

Robotics · Computer Science 2023-02-15 Mrunmayi Mungekar , Leixin Ma , Wenzhong Yan , Vishal Kackar , Shyan Shokrzadeh , M. Khalid Jawed

We report an experimental study of the statistical properties of vibrated granular rings. In this system, a linked rod and bead metallic chain in the form of a ring is collisionally excited by a vertically oscillating plate. The dynamics…

Soft Condensed Matter · Physics 2015-07-22 Z. A. Daya , E. Ben-Naim , R. E. Ecke

The Kuramoto model is a paradigmatic tool for studying the dynamics of collective behavior in large ensembles of coupled dynamical systems. Over the past decade a great deal of progress has been made in analytical descriptions of the…

Adaptation and Self-Organizing Systems · Physics 2018-08-15 Per Sebastian Skardal

We discuss recent observational data on the transverse and radial velocities, as well as on the masses of the main components of the Orion Trapezium. Based on the most reliable values of these quantities we study the dynamical evolution of…

Solar and Stellar Astrophysics · Physics 2017-01-18 C. Allen , R. Costero , A. Ruelas-Mayorga , L. J. Sánchez

Several design parameters in collective robotic systems have been investigated and developed in order to explore the cooperation among the autonomous robotic individuals in a variety of robotic swarms in the presence of different internal…

Systems and Control · Computer Science 2012-12-14 Humza Qadir Raja , Oliver Scholz

A detailed calculation of the coherent and incoherent dynamic structure functions of the free Fermi gas, starting from their expressions in terms of the one- and semi-diagonal two-body density matrices, is derived and discussed. Their…

Soft Condensed Matter · Physics 2009-10-31 F. Mazzanti , A. Polls , J. Boronat