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Segmenting brain tumors is complex due to their diverse appearances and scales. Brain metastases, the most common type of brain tumor, are a frequent complication of cancer. Therefore, an effective segmentation model for brain metastases…

Image and Video Processing · Electrical Eng. & Systems 2024-03-26 Siwei Yang , Xianhang Li , Jieru Mei , Jieneng Chen , Cihang Xie , Yuyin Zhou

Purpose: Automated ultrasound image analysis is challenging due to anatomical complexity and limited annotated data. To tackle this, we take a data-centric approach, assembling the largest public ultrasound segmentation dataset and training…

Image and Video Processing · Electrical Eng. & Systems 2025-11-13 Adrien Meyer , Aditya Murali , Farahdiba Zarin , Didier Mutter , Nicolas Padoy

Deep convolutional neural networks (CNNs) are state-of-the-art for semantic image segmentation, but typically require many labeled training samples. Obtaining 3D segmentations of medical images for supervised training is difficult and labor…

Computer Vision and Pattern Recognition · Computer Science 2019-07-29 Zhenlin Xu , Marc Niethammer

Machine learning approaches have become popular for molecular modeling tasks, including molecular force fields and properties prediction. Traditional supervised learning methods suffer from scarcity of labeled data for particular tasks,…

Chemical Physics · Physics 2022-11-29 Xiang Gao , Weihao Gao , Wenzhi Xiao , Zhirui Wang , Chong Wang , Liang Xiang

Accurate segmentation of brain tumors plays a key role in the diagnosis and treatment of brain tumor diseases. It serves as a critical technology for quantifying tumors and extracting their features. With the increasing application of deep…

Image and Video Processing · Electrical Eng. & Systems 2024-11-05 Longfeng Shen , Yanqi Hou , Jiacong Chen , Liangjin Diao , Yaxi Duan

Semantic segmentation has been widely investigated in the community, in which the state of the art techniques are based on supervised models. Those models have reported unprecedented performance at the cost of requiring a large set of high…

Computer Vision and Pattern Recognition · Computer Science 2022-01-11 Rihuan Ke , Angelica Aviles-Rivero , Saurabh Pandey , Saikumar Reddy , Carola-Bibiane Schönlieb

The Segment Anything Model (SAM) is a recently developed large model for general-purpose segmentation for computer vision tasks. SAM was trained using 11 million images with over 1 billion masks and can produce segmentation results for a…

Computer Vision and Pattern Recognition · Computer Science 2023-06-22 Yizhe Zhang , Tao Zhou , Shuo Wang , Peixian Liang , Danny Z. Chen

Self-supervised models allow (pre-)training on unlabeled data and therefore have the potential to overcome the need for large annotated cohorts. One leading self-supervised model is the masked autoencoder (MAE) which was developed on…

Image and Video Processing · Electrical Eng. & Systems 2023-03-13 Daniel M. Lang , Eli Schwartz , Cosmin I. Bercea , Raja Giryes , Julia A. Schnabel

Automation of brain tumor segmentation in 3D magnetic resonance images (MRIs) is key to assess the diagnostic and treatment of the disease. In recent years, convolutional neural networks (CNNs) have shown improved results in the task.…

Image and Video Processing · Electrical Eng. & Systems 2021-01-01 Laura Mora Ballestar , Veronica Vilaplana

Foundation models have transformed vision and language by learning general-purpose representations from large-scale unlabeled data, yet 3D medical imaging lacks analogous approaches. Existing self-supervised methods rely on low-level…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Yunhe Gao , Yabin Zhang , Chong Wang , Jiaming Liu , Maya Varma , Jean-Benoit Delbrouck , Akshay Chaudhari , Curtis Langlotz

Existing self-supervised learning methods based on contrastive learning and masked image modeling have demonstrated impressive performances. However, current masked image modeling methods are mainly utilized in natural images, and their…

Computer Vision and Pattern Recognition · Computer Science 2023-02-28 Xiangtao Wang , Ruizhi Wang , Biao Tian , Jiaojiao Zhang , Shuo Zhang , Junyang Chen , Thomas Lukasiewicz , Zhenghua Xu

Recent advances in deep learning have led to robust automated tools for segmentation of abdominal computed tomography (CT). Meanwhile, segmentation of magnetic resonance imaging (MRI) is substantially more challenging due to the inherent…

Image and Video Processing · Electrical Eng. & Systems 2025-07-28 Deepa Krishnaswamy , Cosmin Ciausu , Steve Pieper , Ron Kikinis , Benjamin Billot , Andrey Fedorov

Automated segmentation of distinct tumor regions is critical for accurate diagnosis and treatment planning in pediatric brain tumors. This study evaluates the efficacy of the Multi-Planner U-Net (MPUnet) approach in segmenting different…

Image and Video Processing · Electrical Eng. & Systems 2024-01-15 Sumit Pandey , Satyasaran Changdar , Mathias Perslev , Erik B Dam

Cancer is an abnormal growth with potential to invade locally and metastasize to distant organs. Accurate auto-segmentation of the tumor and surrounding normal tissues is required for radiotherapy treatment plan optimization. Recent…

Image and Video Processing · Electrical Eng. & Systems 2025-07-31 Syed Haider Ali , Asrar Ahmad , Muhammad Ali , Asifullah Khan , Nadeem Shaukat

The past few years have seen remarkable progress in the decoding of speech from brain activity, primarily driven by large single-subject datasets. However, due to individual variation, such as anatomy, and differences in task design and…

Machine Learning · Computer Science 2025-06-03 Dulhan Jayalath , Gilad Landau , Brendan Shillingford , Mark Woolrich , Oiwi Parker Jones

The pre-training and fine-tuning paradigm has revolutionized satellite remote sensing applications. However, this approach remains largely underexplored for airborne laser scanning (ALS), an important technology for applications such as…

Computer Vision and Pattern Recognition · Computer Science 2025-01-10 Haoyi Xiu , Xin Liu , Taehoon Kim , Kyoung-Sook Kim

Self-supervised learning has been a powerful training paradigm to facilitate representation learning. In this study, we design a masked autoencoder (MAE) to guide deep learning models to learn electroencephalography (EEG) signal…

Human-Computer Interaction · Computer Science 2024-09-04 Yifei Zhou , Sitong Liu

Brain tumors are among the deadliest cancers worldwide, with particularly devastating impact in Sub-Saharan Africa (SSA) where limited access to medical imaging infrastructure and expertise often delays diagnosis and treatment planning.…

We present FOMO260K, a large-scale, heterogeneous dataset of 260,927 brain Magnetic Resonance Imaging (MRI) scans from 77,589 MRI sessions and 55,378 subjects, aggregated from 910 publicly available sources. The dataset includes both…

In the field of medical image segmentation, challenges such as indistinct lesion features, ambiguous boundaries,and multi-scale characteristics have long revailed. This paper proposes an improved method named Intensity-Spatial Dual Masked…

Image and Video Processing · Electrical Eng. & Systems 2025-02-17 Yuexing Ding , Jun Wang , Hongbing Lyu