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The numerical solution of the Kadanoff-Baym nonlinear integro-differential equations, which yields the non-equilibrium Green's functions (NEGFs) of quantum many-body systems, poses significant computational challenges due to its high…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-27 Jia Yin , Khaled Z. Ibrahim , Mauro Del Ben , Jack Deslippe , Yang-hao Chan , Chao Yang

Strong gravitational lensing is a powerful probe of cosmology and the dark matter distribution. Efficient lensing software is already a necessity to fully use its potential and the performance demands will only increase with the upcoming…

Instrumentation and Methods for Astrophysics · Physics 2019-02-12 Markus Rexroth , Christoph Schäfer , Gilles Fourestey , Jean-Paul Kneib

We consider differential Lyapunov and Riccati equations, and generalized versions thereof. Such equations arise in many different areas and are especially important within the field of optimal control. In order to approximate their…

Numerical Analysis · Mathematics 2018-10-23 Hermann Mena , Lena-Maria Pfurtscheller , Tony Stillfjord

Sorting is a primitive operation that is a building block for countless algorithms. As such, it is important to design sorting algorithms that approach peak performance on a range of hardware architectures. Graphics Processing Units (GPUs)…

Data Structures and Algorithms · Computer Science 2017-03-31 Henri Casanova , John Iacono , Ben Karsin , Nodari Sitchinava , Volker Weichert

The complex regulatory dynamics of a biological network can be succinctly captured using discrete logic models. Given even sparse time-course data from the system of interest, previous work has shown that global optimization schemes are…

Molecular Networks · Quantitative Biology 2026-04-22 Joyce Reimer , Pranta Saha , Chris Chen , Neeraj Dhar , Brook Byrns , Steven Rayan , Gordon Broderick

In this paper, a contrastive evaluation of massively parallel implementations of suffix tree and suffix array to accelerate genome sequence matching are proposed based on Intel Core i7 3770K quad-core and NVIDIA GeForce GTX680 GPU. Besides…

Data Structures and Algorithms · Computer Science 2015-05-05 Gang Liao , Qi Sun , Longfei Ma , Sha Ding , Wen Xie

In this study, the gravitational octree code originally optimized for the Fermi, Kepler, and Maxwell GPU architectures is adapted to the Volta architecture. The Volta architecture introduces independent thread scheduling requiring either…

Mathematical Software · Computer Science 2018-11-08 Yohei Miki

Purpose: Visual perception enables robots to perceive the environment. Visual data is processed using computer vision algorithms that are usually time-expensive and require powerful devices to process the visual data in real-time, which is…

Computer Vision and Pattern Recognition · Computer Science 2022-11-22 Sandro Costa Magalhães , Filipe Neves Santos , Pedro Machado , António Paulo Moreira , Jorge Dias

Modern high-performance computing (HPC) increasingly relies on GPUs, but integrating GPU acceleration into complex scientific frameworks like OpenFOAM remains a challenge. Existing approaches either fully refactor the codebase or use…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-10 Gregor Olenik , Marcel Koch , Hartwig Anzt

Gravitational $N$-body simulations calculate numerous interactions between particles. The tree algorithm reduces these calculations by constructing a hierarchical oct-tree structure and approximating gravitational forces on particles. Over…

Instrumentation and Methods for Astrophysics · Physics 2024-01-09 Tomoyuki Tokuue , Tomoaki Ishiyama

Mixed-precision algorithms have been proposed as a way for scientific computing to benefit from some of the gains seen for artificial intelligence (AI) on recent high performance computing (HPC) platforms. A few applications dominated by…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-16 Aditya Kashi , Nicholson Koukpaizan , Hao Lu , Michael Matheson , Sarp Oral , Feiyi Wang

Subgraph matching has garnered increasing attention for its diverse real-world applications. Given the dynamic nature of real-world graphs, addressing evolving scenarios without incurring prohibitive overheads has been a focus of research.…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-31 Linshan Qiu , Lu Chen , Hailiang Jie , Xiangyu Ke , Yunjun Gao , Yang Liu , Zetao Zhang

We present an interface and an implementation of the General Matrix Multiply (GEMM) routine for multiple small matrices processed simultaneously on NVIDIA graphics processing units (GPUs). We focus on matrix sizes under 16. The…

Mathematical Software · Computer Science 2013-04-29 Chetan Jhurani , Paul Mullowney

High parallel framework has been proved to be very suitable for graph processing. There are various work to optimize the implementation in FPGAs, a pipeline parallel device. The key to make use of the parallel performance of FPGAs is to…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-02 Chengbo Yang

Real-time trajectory optimization for nonlinear constrained autonomous systems is critical and typically performed by CPU-based sequential solvers. Specifically, reliance on global sparse linear algebra or the serial nature of dynamic…

Robotics · Computer Science 2026-03-13 Yilin Zou , Zhong Zhang , Maxime Robic , Fanghua Jiang

Modern Large Language Model serving system batches multiple requests to achieve high throughput, while batching attention operations is challenging, rendering memory bandwidth a critical bottleneck. The community relies on high-end GPUs…

Hardware Architecture · Computer Science 2025-05-15 Minsu Kim , Seongmin Hong , RyeoWook Ko , Soongyu Choi , Hunjong Lee , Junsoo Kim , Joo-Young Kim , Jongse Park

This paper presents the Neural Cache architecture, which re-purposes cache structures to transform them into massively parallel compute units capable of running inferences for Deep Neural Networks. Techniques to do in-situ arithmetic in…

Hardware Architecture · Computer Science 2018-05-11 Charles Eckert , Xiaowei Wang , Jingcheng Wang , Arun Subramaniyan , Ravi Iyer , Dennis Sylvester , David Blaauw , Reetuparna Das

The AI hardware boom has led modern data centers to adopt HPC-style architectures centered on distributed, GPU-centric computation. Large GPU clusters interconnected by fast RDMA networks and backed by high-bandwidth NVMe storage enable…

Databases · Computer Science 2026-05-21 Jigao Luo , Nils Boeschen , Muhammad El-Hindi , Carsten Binnig

Structural clustering is one of the most popular graph clustering methods, which has achieved great performance improvement by utilizing GPUs. Even though, the state-of-the-art GPU-based structural clustering algorithm, GPUSCAN, still…

Databases · Computer Science 2023-12-01 Long Yuan , Zeyu Zhou , Xuemin Lin , Zi Chen , Xiang Zhao , Fan Zhang

We employ the Partially Saturated Cells Method (PSM) to model the interaction between the fluid flow and solid moving objects as an extension to the conventional lattice Boltzmann method. We introduce an efficient and accurate method for…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-28 P. Suffa , S. Kemmler , H. Koestler , U. Ruede