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Motivation: Hi-C matrices are cornerstones for qualitative and quantitative studies of genome folding, from its territorial organization to compartments and topological domains. The high dynamic range of genomic distances probed in Hi-C…

Genomics · Quantitative Biology 2021-01-27 Stefano Franzini , Marco Di Stefano , Cristian Micheletti

This article seeks to advance coded compressed sensing (CCS) as a practical scheme for unsourced random access. The original CCS algorithm features a concatenated structure where an inner code is tasked with support recovery, and an outer…

Information Theory · Computer Science 2020-10-23 Jamison R. Ebert , Vamsi K. Amalladinne , Jean-Francois Chamberland , Krishna R. Narayanan

We present a hierarchical optimization architecture for large-scale power networks that overcomes limitations of fully centralized and fully decentralized architectures. The architecture leverages principles of multigrid computing schemes,…

Optimization and Control · Mathematics 2020-04-01 Sungho Shin , Philip Hart , Thomas Jahns , Victor M. Zavala

Learned Image Compression (LIC) has achieved dramatic progress regarding objective and subjective metrics. MSE-based models aim to improve objective metrics while generative models are leveraged to improve visual quality measured by…

Image and Video Processing · Electrical Eng. & Systems 2024-05-24 Jixiang Luo , Yan Wang , Hongwei Qin

Quantum computers are appealing for their ability to solve some tasks much faster than their classical counterparts. It was shown in [Aspuru-Guzik et al., Science 309, 1704 (2005)] that they, if available, would be able to perform the full…

Quantum Physics · Physics 2010-11-19 Libor Veis , Jiří Pittner

A method is suggested to build simple multiconfigurational wave functions specified uniquely by an energy cutoff $\Lambda$. These are constructed from a model space containing determinants with energy relative to that of the most stable…

Chemical Physics · Physics 2015-06-19 Francesco A. Evangelista

We present a new implementation of the hybrid antisymmetrized Coupled Channels (haCC) method in the framework of the tRecX [A. Scrinzi, Comp. Phys. Comm., 270:108146, 2022.]. The method represents atomic and molecular multi-electron…

Computational Physics · Physics 2024-05-02 Hareesh Chundayil , Vinay P. Majety , Armin Scrinzi

Exascale computing promises quantities of data too large to efficiently store and transfer across networks in order to be able to analyze and visualize the results. We investigate Compressive Sensing (CS) as a way to reduce the size of the…

Information Theory · Computer Science 2015-08-27 Maher Salloum , Nathan Fabian , David M. Hensinger , Jeremy A. Templeton

Electronic structure calculations based on density-functional theory (DFT) represent a significant part of today's HPC workloads and pose high demands on high-performance computing resources. To perform these quantum-mechanical DFT…

Computational Physics · Physics 2021-04-28 Michael Lass , Robert Schade , Thomas D. Kühne , Christian Plessl

Boundary integral equations lead to dense system matrices when discretized, yet they are data-sparse. Using the $\mathcal{H}$-matrix format, this sparsity is exploited to achieve $\mathcal{O}(N\log N)$ complexity for storage and…

Numerical Analysis · Mathematics 2025-05-22 Kobe Bruyninckx , Daan Huybrechs , Karl Meerbergen

Deep neural networks (DNNs) are the de facto standard for essential use cases, such as image classification, computer vision, and natural language processing. As DNNs and datasets get larger, they require distributed training on…

Machine Learning · Computer Science 2024-03-07 Minghao Li , Ran Ben Basat , Shay Vargaftik , ChonLam Lao , Kevin Xu , Michael Mitzenmacher , Minlan Yu

We introduce and compare new compression approaches to obtain regularized solutions of large linear systems which are commonly encountered in large scale inverse problems. We first describe how to approximate matrix vector operations with a…

Numerical Analysis · Mathematics 2016-08-12 Sergey Voronin , Dylan Mikesell , Guust Nolet

Mechanical vibration monitoring often requires high sampling rates and generates large data volumes, posing challenges for storage, transmission, and power efficiency. Compressive Sensing (CS) offers a promising approach to overcome these…

Signal Processing · Electrical Eng. & Systems 2026-03-27 Imen Tounsi , Fadi Karkafi , Mohammed El Badaoui , François Guillet

In materials, certain approximated symmetry operations can exist in a lower-order approximation of the effective model but are good enough to influence the physical responses of the system, and these approximated symmetries were recently…

Mesoscale and Nanoscale Physics · Physics 2023-04-05 Lun-Hui Hu , Chunyu Guo , Yan Sun , Claudia Felser , Luis Elcoro , Philip J. W. Moll , Chao-Xing Liu , B. Andrei Bernevig

Multi-vector document retrieval systems, such as ColPali, excel in fine-grained matching for complex queries but incur significant storage and computational costs due to their reliance on high-dimensional patch embeddings and…

Information Retrieval · Computer Science 2025-07-03 Duong Bach

This paper examines the theory pertaining to lossless compression of correlated sources located at the edge of a network. Importantly, communication between nodes is prohibited. In particular, a method that combines correlated source coding…

Information Theory · Computer Science 2020-03-25 Benjamin Rosen , Shane House , Shamin Achari , Ling Cheng

Matrices are exceptionally useful in various fields of study as they provide a convenient framework to organize and manipulate data in a structured manner. However, modern matrices can involve billions of elements, making their storage and…

Machine Learning · Computer Science 2023-10-18 Rajarshi Saha , Varun Srivastava , Mert Pilanci

We consider the attributes of a point cloud as samples of a vector-valued volumetric function at discrete positions. To compress the attributes given the positions, we compress the parameters of the volumetric function. We model the…

Graphics · Computer Science 2021-11-18 Berivan Isik , Philip A. Chou , Sung Jin Hwang , Nick Johnston , George Toderici

In a recent paper, J. Chem. Phys. 162, 214101 (2025), a novel approach for the rigidification of a molecular cluster was proposed, in which starting with an all-atom (AA) potential, a coarse-grained (CG) potential for the associated cluster…

Chemical Physics · Physics 2025-09-08 João V. M. Pimentel , Vladimir A. Mandelshtam

Strong correlation can be essentially captured with multireference wavefunction methods such as complete active space self-consistent field (CASSCF) or density matrix renormalization group (DMRG). Still, an accurate description of the…

Strongly Correlated Electrons · Physics 2022-04-06 Daria Drwal , Pavel Beran , Michał Hapka , Marcin Modrzejewski , Adam Sokół , Libor Veis , Katarzyna Pernal
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