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We present the design and implementation of a RAG-based AI system benchmarking (RAGPerf) framework for characterizing the system behaviors of RAG pipelines. To facilitate detailed profiling and fine-grained performance analysis, RAGPerf…

While recent NeRF-based generative models achieve the generation of diverse 3D-aware images, these approaches have limitations when generating images that contain user-specified characteristics. In this paper, we propose a novel model,…

Computer Vision and Pattern Recognition · Computer Science 2021-12-08 Kyungmin Jo , Gyumin Shim , Sanghun Jung , Soyoung Yang , Jaegul Choo

Inference of Convolutional Neural Networks in time critical applications usually requires a GPU. In robotics or embedded devices these are often not available due to energy, space and cost constraints. Furthermore, installation of a deep…

Machine Learning · Computer Science 2020-01-17 Oliver Urbann , Simon Camphausen , Arne Moos , Ingmar Schwarz , Sören Kerner , Maximilian Otten

Cellular differentiation is governed by gene regulatory networks, the high-dimensional stochastic biochemical systems that determine the transcriptional landscape and mediate cellular responses to signals and perturbations. Although…

Molecular Networks · Quantitative Biology 2026-04-29 Suryanarayana Maddu , Victor Chardès , Michael J. Shelley

This paper focuses on the dynamic optimization of the Retrieval-Augmented Generation (RAG) architecture. It proposes a state-aware dynamic knowledge retrieval mechanism to enhance semantic understanding and knowledge scheduling efficiency…

Computation and Language · Computer Science 2025-04-29 Jacky He , Guiran Liu , Binrong Zhu , Hanlu Zhang , Hongye Zheng , Xiaokai Wang

This paper presents our computational methodology using Genetic Algorithms (GA) for exploring the nature of RNA editing. These models are constructed using several genetic editing characteristics that are gleaned from the RNA editing system…

Neural and Evolutionary Computing · Computer Science 2007-05-23 C. Huang , L. M. Rocha

Emerging high-throughput technologies have led to a deluge of putative non-coding RNA (ncRNA) sequences identified in a wide variety of organisms. Systematic characterization of these transcripts will be a tremendous challenge. Homology…

Biomolecules · Quantitative Biology 2016-01-27 Lars Barquist , Sarah W. Burge , Paul P. Gardner

Biological classification with interpretability remains a challenging task. For this, we introduce a novel encoding framework, Multi-Scale Reversible Chaos Game Representation (MS-RCGR), that transforms biological sequences into…

Machine Learning · Computer Science 2026-04-21 Sarwan Ali , Taslim Murad

Most existing swarm pattern formation methods depend on a predefined gene regulatory network (GRN) structure that requires designers' priori knowledge, which is difficult to adapt to complex and changeable environments. To dynamically adapt…

Neural and Evolutionary Computing · Computer Science 2019-11-04 Zhun Fan , Zhaojun Wang , Xiaomin Zhu , Bingliang Hu , Anmin Zou , Dongwei Bao

Synthetic data generation for tabular datasets must balance fidelity, efficiency, and versatility to meet the demands of real-world applications. We introduce the Tabular Auto-Regressive Generative Network (TabularARGN), a flexible…

Machine Learning · Computer Science 2025-02-07 Paul Tiwald , Ivona Krchova , Andrey Sidorenko , Mariana Vargas Vieyra , Mario Scriminaci , Michael Platzer

Retrieval-augmented generation (RAG) has evolved into a family of paradigms with distinct performance profiles and resource demands, turning paradigm selection into a multi-criteria, context-dependent decision problem. Nevertheless,…

Information Retrieval · Computer Science 2026-04-07 Ziqi Wang , Xi Zhu , Shuhang Lin , Haochen Xue , Minghao Guo , Yongfeng Zhang

Conditional set generation learns a mapping from an input sequence of tokens to a set. Several NLP tasks, such as entity typing and dialogue emotion tagging, are instances of set generation. Seq2Seq models, a popular choice for set…

Computation and Language · Computer Science 2022-10-25 Aman Madaan , Dheeraj Rajagopal , Niket Tandon , Yiming Yang , Antoine Bosselut

Developing an MR sequence is challenging and remains largely constrained by human intuition. Recently, AI-driven approaches have been proposed; however, most require an initial sequence for parameter optimization or extensive training…

Artificial Intelligence · Computer Science 2026-04-17 Rokgi Hong , Hongjun An , Sooyeon Ji , Jongho Lee

We propose a new approach for modelling the process of RNA folding as a graph transformation guided by the global value of free energy. Since the folding process evolves towards a configuration in which the free energy is minimal, the…

Formal Languages and Automata Theory · Computer Science 2016-12-07 Adane Letta Mamuye , Emanuela Merelli , Luca Tesei

In the medical field, the limited availability of large-scale datasets and labor-intensive annotation processes hinder the performance of deep models. Diffusion-based generative augmentation approaches present a promising solution to this…

Computer Vision and Pattern Recognition · Computer Science 2026-02-19 Xinrui Zhou , Yuhao Huang , Haoran Dou , Shijing Chen , Ao Chang , Jia Liu , Weiran Long , Jian Zheng , Erjiao Xu , Jie Ren , Alejandro F. Frangi , Ruobing Huang , Jun Cheng , Xiaomeng Li , Wufeng Xue , Dong Ni

Feature generation can significantly enhance learning outcomes, particularly for tasks with limited data. An effective way to improve feature generation is to expand the current feature space using existing features and enriching the…

Computation and Language · Computer Science 2025-11-11 Xinhao Zhang , Jinghan Zhang , Fengran Mo , Dakshak Keerthi Chandra , Yu-Zhong Chen , Fei Xie , Kunpeng Liu

Conditional generative models have achieved considerable success in the past few years, but usually require a lot of labeled data. Recently, ClusterGAN combines GAN with an encoder to achieve remarkable clustering performance via…

Machine Learning · Computer Science 2021-04-06 Fei Ding , Feng Luo , Yin Yang

Generative models have become increasingly powerful tools for robot motion generation, enabling flexible and multimodal trajectory generation across various tasks. Yet, most existing approaches remain limited in handling multiple types of…

Robotics · Computer Science 2026-01-15 Zewen Yang , Xiaobing Dai , Dian Yu , Zhijun Li , Majid Khadiv , Sandra Hirche , Sami Haddadin

Generating high-quality time series data has emerged as a critical research topic due to its broad utility in supporting downstream time series mining tasks. A major challenge lies in modeling the intrinsic stochasticity of temporal…

Artificial Intelligence · Computer Science 2025-11-20 He Panjing , Cheng Mingyue , Li Li , Zhang XiaoHan

Understanding the connection between complex structural features of RNA and biological function is a fundamental challenge in evolutionary studies and in RNA design. However, building datasets of RNA 3D structures and making appropriate…

Biomolecules · Quantitative Biology 2024-05-06 Carlos Oliver , Vincent Mallet , Jérôme Waldispühl