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Understanding and modelling the complexity of the immune system is a challenge that is shared by the ImmunoComplexiT$^1$ thematic network from the RNSC. The immune system is a complex biological, adaptive, highly diversified, self-organized…

Quantitative Methods · Quantitative Biology 2020-08-27 Véronique Thomas-Vaslin

The present work proposes the concept of induced percolation over multiple-object systems, so that features such as the number of merged clusters can be used as a relevant measurement. The suggested approach involves the expansion of the…

Disordered Systems and Neural Networks · Physics 2007-05-23 Luciano da Fontoura Costa

Recently, there has been a surge of explainable AI (XAI) methods driven by the need for understanding machine learning model behaviors in high-stakes scenarios. However, properly evaluating the effectiveness of the XAI methods inevitably…

Human-Computer Interaction · Computer Science 2024-03-12 Jiaqi Ma , Vivian Lai , Yiming Zhang , Chacha Chen , Paul Hamilton , Davor Ljubenkov , Himabindu Lakkaraju , Chenhao Tan

We consider Bayesian algorithm execution (BAX), a framework for efficiently selecting evaluation points of an expensive function to infer a property of interest encoded as the output of a base algorithm. Since the base algorithm typically…

Machine Learning · Computer Science 2024-10-29 Chu Xin Cheng , Raul Astudillo , Thomas Desautels , Yisong Yue

Ashby's performance indexes are a fundamental tool for material selection especially for structures lightening. Unfortunately the indexes are available only for simple mechanical solicitation as pure bending or pure tension. For real…

Materials Science · Physics 2012-02-29 O. Bouaziz , J. P. Masse

Machine learning (ML) algorithms are showing a growing trend in helping the scientific communities across different disciplines and institutions to address large and diverse data problems. However, many available ML tools are…

Numerous methods have been proposed to transform color and grayscale images to their single bit-per-pixel binary counterparts. Commonly, the goal is to enhance specific attributes of the original image to make it more amenable for analysis.…

Computer Vision and Pattern Recognition · Computer Science 2021-05-06 Shumeet Baluja

Generalized ensemble methods such as Hamiltonian replica exchange (HREX) and expanded ensemble (EE) have been shown effective in free energy calculations for various contexts, given their ability to circumvent free energy barriers via…

Statistical Mechanics · Physics 2024-04-12 Wei-Tse Hsu , Michael R. Shirts

Explaining a classification result produced by an image- and video-classification model is one of the important but challenging issues in computer vision. Many methods have been proposed for producing heat-map--based explanations for this…

Computer Vision and Pattern Recognition · Computer Science 2022-11-01 Atsushi Kikuchi , Kotaro Uchida , Masaki Waga , Kohei Suenaga

Knowledge graphs have emerged as fundamental structures for representing complex relational data across scientific and enterprise domains. However, existing embedding methods face critical limitations when modeling diverse relationship…

Artificial Intelligence · Computer Science 2025-11-17 Jugal Gajjar , Kaustik Ranaware , Kamalasankari Subramaniakuppusamy , Vaibhav Gandhi

While there has been substantial progress in factoid question-answering (QA), answering complex questions remains challenging, typically requiring both a large body of knowledge and inference techniques. Open Information Extraction (Open…

Artificial Intelligence · Computer Science 2017-04-20 Tushar Khot , Ashish Sabharwal , Peter Clark

Using optical speckle scanning microscopy [1], we demonstrate that clear images of multiple cells can be obtained through biological scattering tissue, with subcellular resolution and good image quality, as long as the size of the imaging…

Optics · Physics 2023-07-19 Xin Yang , Ye Pu , Demetri Psaltis

Through case studies, we demonstrate how multiverse analysis can strengthen the robustness and transparency of computational social science findings against alternative methodological decisions. We conduct multiverse analyses of three…

Other Statistics · Statistics 2026-05-20 Maximilian Linde , Jun Sun , Paul Balluff , Danica Radovanović , Chung-hong Chan

Recent research in explainability has given rise to numerous post-hoc attribution methods aimed at enhancing our comprehension of the outputs of black-box machine learning models. However, evaluating the quality of explanations lacks a…

Machine Learning · Computer Science 2024-07-30 Samuel Sithakoul , Sara Meftah , Clément Feutry

OpenPBR is a physically based, standardized uber-shader developed for interoperable material authoring and rendering across VFX, animation, and design visualization workflows. This document serves as a companion to the official…

Graphics · Computer Science 2026-01-15 Jamie Portsmouth , Peter Kutz , Stephen Hill

In recent years, there has been an increasing number of frameworks developed for biomedical entity and relation extraction. This research effort aims to address the accelerating growth in biomedical publications and the intricate nature of…

Computation and Language · Computer Science 2024-08-14 Minh Nguyen , Phuong Le

Compared to the general news domain, information extraction (IE) from biomedical text requires much broader domain knowledge. However, many previous IE methods do not utilize any external knowledge during inference. Due to the exponential…

Computation and Language · Computer Science 2021-06-02 Tuan Lai , Heng Ji , ChengXiang Zhai , Quan Hung Tran

A model for the spreading of online information or "memes" on multiplex networks is introduced and analyzed using branching-process methods. The model generalizes that of [Gleeson et al., Phys.Rev. X., 2016] in two ways. First, even for a…

Physics and Society · Physics 2019-03-01 Joseph D. O'Brien , Ioannis K. Dassios , James P. Gleeson

MatNexus is a specialized software for the automated collection, processing, and analysis of text from scientific articles. Through an integrated suite of modules, the MatNexus facilitates the retrieval of scientific articles, processes…

Materials Science · Physics 2024-03-21 Lei Zhang , Markus Stricker

With the increased interest in computational sciences, machine learning (ML), pattern recognition (PR) and big data, governmental agencies, academia and manufacturers are overwhelmed by the constant influx of new algorithms and techniques…

Software Engineering · Computer Science 2017-07-28 André Anjos , Laurent El-Shafey , Sébastien Marcel