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Related papers: GraphBPE: Molecular Graphs Meet Byte-Pair Encoding

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Byte Pair Encoding (BPE) serves as a foundation method for text tokenization in the Natural Language Processing (NLP) field. Despite its wide adoption, the original BPE algorithm harbors an inherent flaw: it inadvertently introduces a…

Computation and Language · Computer Science 2024-11-14 Haoran Lian , Yizhe Xiong , Jianwei Niu , Shasha Mo , Zhenpeng Su , Zijia Lin , Hui Chen , Peng Liu , Jungong Han , Guiguang Ding

The success of pretrained transformer language models (LMs) in natural language processing has led to a wide range of pretraining setups. In particular, these models employ a variety of subword tokenization methods, most notably byte-pair…

Computation and Language · Computer Science 2020-10-06 Kaj Bostrom , Greg Durrett

Traditional greedy tokenization methods have been a critical step in Natural Language Processing (NLP), influencing how text is converted into tokens and directly impacting model performance. While subword tokenizers like Byte-Pair Encoding…

Computation and Language · Computer Science 2025-05-05 Bharath Raj , Garvit Suri , Vikrant Dewangan , Raghav Sonavane

In this work, we show a fundamental limitation in vocabulary adaptation approaches that use Byte-Pair Encoding (BPE) tokenization scheme for fine-tuning pretrained language models (PLMs) to expert domains. Current approaches trivially…

Computation and Language · Computer Science 2025-04-29 Gunjan Balde , Soumyadeep Roy , Mainack Mondal , Niloy Ganguly

Byte-Pair Encoding (BPE) is a popular algorithm used for tokenizing data in NLP, despite being devised initially as a compression method. BPE appears to be a greedy algorithm at face value, but the underlying optimization problem that BPE…

Computation and Language · Computer Science 2024-09-04 Vilém Zouhar , Clara Meister , Juan Luis Gastaldi , Li Du , Tim Vieira , Mrinmaya Sachan , Ryan Cotterell

Pre-tokenization, the initial step in many modern tokenization pipelines, segments text into smaller units called pretokens, typically splitting on whitespace and punctuation. While this process encourages having full, individual words as…

Computation and Language · Computer Science 2025-10-03 Craig W. Schmidt , Varshini Reddy , Chris Tanner , Yuval Pinter

Graph neural networks (GNNs) have been proposed for a wide range of graph-related learning tasks. In particular, in recent years, an increasing number of GNN systems were applied to predict molecular properties. However, a direct impediment…

Biomolecules · Quantitative Biology 2021-04-23 Yingfang Yuan , Wenjun Wang , Wei Pang

Tokenization is a crucial step in NLP, especially with the rise of large language models (LLMs), impacting downstream performance, computational cost, and efficiency. Existing LLMs rely on the classical Byte-pair Encoding (BPE) algorithm…

Computation and Language · Computer Science 2025-11-10 Maharaj Brahma , N J Karthika , Atul Singh , Devaraj Adiga , Smruti Bhate , Ganesh Ramakrishnan , Rohit Saluja , Maunendra Sankar Desarkar

State-of-the-art language models are autoregressive and operate on subword units known as tokens. Specifically, one must encode the conditioning string into a list of tokens before passing to the language models for next-token prediction.…

Computation and Language · Computer Science 2024-07-09 Buu Phan , Marton Havasi , Matthew Muckley , Karen Ullrich

Byte-pair encoding (BPE) is a ubiquitous algorithm in the subword tokenization process of language models as it provides multiple benefits. However, this process is solely based on pre-training data statistics, making it hard for the…

Computation and Language · Computer Science 2021-09-27 Gustavo Aguilar , Bryan McCann , Tong Niu , Nazneen Rajani , Nitish Keskar , Thamar Solorio

We propose a generalization of neural network sequence models. Instead of predicting one symbol at a time, our multi-scale model makes predictions over multiple, potentially overlapping multi-symbol tokens. A variation of the byte-pair…

Machine Learning · Statistics 2017-07-06 Bart van Merriënboer , Amartya Sanyal , Hugo Larochelle , Yoshua Bengio

While Large Language Models (LLMs) have shown exceptional generalization capabilities, their ability to process graph data, such as molecular structures, remains limited. To bridge this gap, this paper proposes Graph2Token, an efficient…

Machine Learning · Computer Science 2025-03-11 Runze Wang , Mingqi Yang , Yanming Shen

We introduce a morpheme-aware subword tokenization method that utilizes sub-character decomposition to address the challenges of applying Byte Pair Encoding (BPE) to Korean, a language characterized by its rich morphology and unique writing…

Computation and Language · Computer Science 2023-11-08 Taehee Jeon , Bongseok Yang , Changhwan Kim , Yoonseob Lim

Tokenization is a critical preprocessing step in large language model pipelines, yet widely-used implementations remain CPU-bound and suboptimal for batch inference workflows on GPU. We present BlockBPE, a parallel GPU implementation of…

Computation and Language · Computer Science 2025-07-17 Amos You

Existing Machine Translation (MT) research often suggests a single, fixed set of hyperparameters for word segmentation models, symmetric Byte Pair Encoding (BPE), which applies the same number of merge operations (NMO) to train tokenizers…

Computation and Language · Computer Science 2026-02-16 Saumitra Yadav , Manish Shrivastava

This study investigates the impact of morphological typology on tokenization and language modeling performance. We focus on languages with synthetic and analytical morphological structures and examine their productivity when tokenized using…

Computation and Language · Computer Science 2024-11-01 Iñigo Parra

Automated malware analysis increasingly relies on machine learning, yet most existing methods remain task-specific and depend on handcrafted features or narrowly scoped models. Recent developments in binary-level foundation models suggest a…

Cryptography and Security · Computer Science 2026-05-19 Saastha Vasan , Yuzhou Nie , Kaie Chen , Yigitcan Kaya , Hojjat Aghakhani , Roman Vasilenko , Wenbo Guo , Christopher Kruegel , Giovanni Vigna

The problem of accelerating drug discovery relies heavily on automatic tools to optimize precursor molecules to afford them with better biochemical properties. Our work in this paper substantially extends prior state-of-the-art on…

Chemical Physics · Physics 2019-10-22 Wengong Jin , Regina Barzilay , Tommi Jaakkola

In language processing, transformers benefit greatly from text being condensed. This is achieved through a larger vocabulary that captures word fragments instead of plain characters. This is often done with Byte Pair Encoding. In the…

Computer Vision and Pattern Recognition · Computer Science 2024-11-18 Tim Elsner , Paula Usinger , Julius Nehring-Wirxel , Gregor Kobsik , Victor Czech , Yanjiang He , Isaak Lim , Leif Kobbelt

Most neural machine translation systems are built upon subword units extracted by methods such as Byte-Pair Encoding (BPE) or wordpiece. However, the choice of number of merge operations is generally made by following existing recipes. In…

Computation and Language · Computer Science 2019-06-26 Shuoyang Ding , Adithya Renduchintala , Kevin Duh