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Isometric feature mapping (Isomap) is a promising manifold learning method. However, Isomap fails to work on data which distribute on clusters in a single manifold or manifolds. Many works have been done on extending Isomap to…

Machine Learning · Computer Science 2009-12-04 Mingyu Fan , Hong Qiao , Bo Zhang

Scientific and engineering processes deliver massive high-dimensional data sets that are generated as non-linear transformations of an initial state and few process parameters. Mapping such data to a low-dimensional manifold facilitates…

Machine Learning · Statistics 2018-08-07 Frank Schoeneman , Varun Chandola , Nils Napp , Olga Wodo , Jaroslaw Zola

Data augmentation techniques play an important role in enhancing the performance of deep learning models. Despite their proven benefits in computer vision tasks, their application in the other domains remains limited. This paper proposes a…

Machine Learning · Computer Science 2024-01-23 Yousef El-Laham , Elizabeth Fons , Dillon Daudert , Svitlana Vyetrenko

Uniform Manifold Approximation and Projection (UMAP) is one of the state-of-the-art methods for dimensionality reduction and data visualization. This is a tutorial and survey paper on UMAP and its variants. We start with UMAP algorithm…

Human-Computer Interaction · Computer Science 2021-09-07 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

Manifold learning techniques for nonlinear dimension reduction assume that high-dimensional feature vectors lie on a low-dimensional manifold, then attempt to exploit manifold structure to obtain useful low-dimensional Euclidean…

Machine Learning · Statistics 2021-10-25 Michael W. Trosset , Gokcen Buyukbas

Manifold learning has been proven to be an effective method for capturing the implicitly intrinsic structure of non-Euclidean data, in which one of the primary challenges is how to maintain the distortion-free (isometry) of the data…

Machine Learning · Computer Science 2024-09-24 Zihao Chen , Wenyong Wang , Yu Xiang

Manifold learning offers nonlinear dimensionality reduction of high-dimensional datasets. In this paper, we bring geometry processing to bear on manifold learning by introducing a new approach based on metric connection for generating a…

Machine Learning · Computer Science 2018-11-05 Max Budninskiy , Glorian Yin , Leman Feng , Yiying Tong , Mathieu Desbrun

Nonlinear dimensional reduction with the manifold assumption, often called manifold learning, has proven its usefulness in a wide range of high-dimensional data analysis. The significant impact of t-SNE and UMAP has catalyzed intense…

Machine Learning · Computer Science 2026-04-02 Jungeum Kim , Xiao Wang

UMAP (Uniform Manifold Approximation and Projection) is a novel manifold learning technique for dimension reduction. UMAP is constructed from a theoretical framework based in Riemannian geometry and algebraic topology. The result is a…

Machine Learning · Statistics 2020-09-21 Leland McInnes , John Healy , James Melville

Uniform Manifold Approximation and Projection (UMAP) is a widely used manifold learning technique for dimensionality reduction. This paper studies UMAP, supervised UMAP, and several competing dimensionality reduction methods, including…

Machine Learning · Computer Science 2026-05-04 Guanzhe Zhang , Shanshan Ding , Zhezhen Jin

Modern machine learning increasingly leverages the insight that high-dimensional data often lie near low-dimensional, non-linear manifolds, an idea known as the manifold hypothesis. By explicitly modeling the geometric structure of data…

Machine Learning · Computer Science 2026-03-02 Willem Diepeveen , Deanna Needell

UMAP is a non-parametric graph-based dimensionality reduction algorithm using applied Riemannian geometry and algebraic topology to find low-dimensional embeddings of structured data. The UMAP algorithm consists of two steps: (1) Compute a…

Machine Learning · Computer Science 2021-08-31 Tim Sainburg , Leland McInnes , Timothy Q Gentner

Neural implicit functions have emerged as a powerful representation for surfaces in 3D. Such a function can encode a high quality surface with intricate details into the parameters of a deep neural network. However, optimizing for the…

Computer Vision and Pattern Recognition · Computer Science 2021-04-13 Wang Yifan , Shihao Wu , Cengiz Oztireli , Olga Sorkine-Hornung

Detecting structure in data is the first step to arrive at meaningful representations for systems. This is particularly challenging for dislocation networks evolving as a consequence of plastic deformation of crystalline systems. Our study…

Materials Science · Physics 2024-06-24 Benjamin Udofia , Tushar Jogi , Markus Stricker

Manifold learning based methods have been widely used for non-linear dimensionality reduction (NLDR). However, in many practical settings, the need to process streaming data is a challenge for such methods, owing to the high computational…

Machine Learning · Statistics 2018-03-20 Suchismit Mahapatra , Varun Chandola

Dimensionality reduction techniques are powerful tools for data preprocessing and visualization which typically come with few guarantees concerning the topological correctness of an embedding. The interleaving distance between the…

Machine Learning · Computer Science 2022-02-01 Bradley J. Nelson , Yuan Luo

This paper introduces IMASHRIMP, an adapted system for the automated morphological analysis of white shrimp (Penaeus vannamei}, aimed at optimizing genetic selection tasks in aquaculture. Existing deep learning and computer vision…

We present a new nonlinear dimensionality reduction method, MAPLE, that enhances UMAP by improving manifold modeling. MAPLE employs a self-supervised learning approach to more efficiently encode low-dimensional manifold geometry. Central to…

Machine Learning · Computer Science 2026-05-15 Zeyang Huang , Takanori Fujiwara , Angelos Chatzimparmpas , Wandrille Duchemin , Andreas Kerren

Manifold learning approaches seek the intrinsic, low-dimensional data structure within a high-dimensional space. Mainstream manifold learning algorithms, such as Isomap, UMAP, $t$-SNE, Diffusion Map, and Laplacian Eigenmaps do not use data…

Machine Learning · Statistics 2023-07-04 Jake S. Rhodes

Although transformer-based models have been dominating the field of deep learning, various studies of their embedding space have shown that they suffer from "representation degeneration problem": embeddings tend to be distributed in a…

Machine Learning · Computer Science 2025-01-13 Sergei Kudriashov , Olesya Karpik , Eduard Klyshinsky
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