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This paper presents a theoretical analysis of the orientation selectivity of simple and complex cells that can be well modelled by the generalized Gaussian derivative model for visual receptive fields, with the purely spatial component of…

Neurons and Cognition · Quantitative Biology 2025-01-30 Tony Lindeberg

The spontaneous bending of core-shell nanowires through asymmetric shell deposition has implications for sensors, enabling both parallel fabrication and creating advantageous out-of-plane nanowire sensor geometries. This study investigates…

Applied Physics · Physics 2025-01-03 Spencer McDermott , Trevor R. Smith , Ryan B. Lewis

We study a generic model for the polarisation and motility of self-propelled soft objects, biological cells or biomimetic systems, interacting with a viscous substrate. The active forces generated by the cell on the substrate are modelled…

Soft Condensed Matter · Physics 2015-06-23 M. Leoni , P. Sens

Recent experiments suggest that the interplay between cells and the mechanics of their substrate gives rise to a diversity of morphological and migrational behaviors. Here, we develop a Cellular Potts Model of polarizing cells on a…

Directing extracellular vesicles (EVs), such as exosomes and microvesicles, toward specific cells is an emerging focus in nanomedicine, owing to their natural role as carriers of proteins, RNAs, and drugs. EVs can be manipulated by external…

Biological Physics · Physics 2025-09-12 Mohammad Zoofaghari , Liv Cornelia Middelthon , Mladen Veletić , Ilangko Balasingham

The polarisation of cells and tissues is fundamental for tissue morphogenesis during biological development and regeneration. A deeper understanding of biological polarity pattern formation can be gained from the consideration of pattern…

Cell Behavior · Quantitative Biology 2017-10-23 Karl B. Hoffmann , Anja Voss-Böhme , Jochen C. Rink , Lutz Brusch

The migration of cells is relevant for processes such as morphogenesis, wound healing, and invasion of cancer cells. In order to move, single cells deform cyclically. However, it is not understood how these shape oscillations influence…

Biological Physics · Physics 2019-09-04 Matteo Campo , Simon K. Schnyder , John J. Molina , Thomas Speck , Ryoichi Yamamoto

Theory of the Linear photogalvanic effect is developed for direct optical transitions between surface states of three-dimensional topological insulators. The photocurrent governed by the orientation of the polarization plane of light and…

Mesoscale and Nanoscale Physics · Physics 2023-04-10 N. V. Leppenen , L. E. Golub

The dynamics of cellular pattern formation is crucial for understanding embryonic development and tissue morphogenesis. Recent studies have shown that human dermal fibroblasts cultured on liquid crystal elastomers can exhibit an increase in…

Biological Physics · Physics 2023-08-25 Mengyang Gu , Xinyi Fang , Yimin Luo

We derive and simulate a mathematical model for mechanotransduction related to the Rho GTPase signalling pathway. The model addresses the bidirectional coupling between signalling processes and cell mechanics. A numerical method based on…

Numerical Analysis · Mathematics 2025-06-11 Sofie Verhees , Chandrasekhar Venkataraman , Mariya Ptashnyk

Many eukaryotic cells are able to perform directional mechanosensing by directly measuring minute spatial differences in the mechanical stress on their membranes. Here, we explore the limits of a single mechanosensitive channel activation…

Biological Physics · Physics 2022-09-29 Roland Bouffanais , Jianmin Sun , Dick K. P. Yue

Confluent populations of elongated cells give rise to ordered patterns seen in nematic phase liquid crystals. We correlate cell elongation and intercellular distance with intercellular alignment using an amorphous spin glass model. We…

Biological Physics · Physics 2016-11-28 Sunil Pai , Nathan Loewke , Morgaine Green , Christine Cordeiro , Elise Cabral , Bertha Chen , Thomas Baer

The Photon Transfer Curve (PTC) of a CCD depicts the variance of uniform images as a function of their average. It is now well established that the variance is not proportional to the average, as Poisson statistics would indicate, but…

Instrumentation and Methods for Astrophysics · Physics 2019-09-11 Pierre Astier , Pierre Antilogus , Claire Juramy , Rémy Le Breton , Laurent Le Guillou , Eduardo Sepulveda , The Dark Energy Science Collaboration

This work probes the role of cell geometry in orienting self-organized fluid flows in the late stage Drosophila oocyte. Recent theoretical work has shown that a model, which relies only on hydrodynamic interactions of flexible, cortically…

Image retrieval-based cross-view localization methods often lead to very coarse camera pose estimation, due to the limited sampling density of the database satellite images. In this paper, we propose a method to increase the accuracy of a…

Computer Vision and Pattern Recognition · Computer Science 2023-07-21 Yujiao Shi , Fei Wu , Akhil Perincherry , Ankit Vora , Hongdong Li

Trafficking of glutamate receptors into and out of synapses is critically involved in the plasticity of excitatory synaptic transmission. Endocytosis and exocytosis of receptors have initially been thought to account alone for this…

Optics · Physics 2007-05-23 Laurent Cognet , Laurent Groc , Brahim Lounis , Daniel Choquet

Adhering cells actively probe the mechanical properties of their environment and use the resulting information to position and orient themselves. We show that a large body of experimental observations can be consistently explained from one…

Soft Condensed Matter · Physics 2009-11-10 I. B. Bischofs , U. S. Schwarz

Based on the derivation of the macroscopic Maxwell's equations by spatial averaging of the microscopic equations, we discuss the electrophysiology of living organs. Other methods of averaging (or homogenization) like the bidomain model are…

Biological Physics · Physics 2010-06-18 Günter Scharf , Christoph Scharf

Biological cells are often found to sense their chemical environment near the single-molecule detection limit. Surprisingly, this precision is higher than simple estimates of the fundamental physical limit, hinting towards active sensing…

Biological Physics · Physics 2015-11-06 Gerardo Aquino , Luke Tweedy , Doris Heinrich , Robert G. Endres

Central to the functioning of a living cell is its ability to control the readout or expression of information encoded in the genome. In many cases, a single transcription factor protein activates or represses the expression of many genes.…

Molecular Networks · Quantitative Biology 2013-05-29 Aleksandra M. Walczak , Gapser Tkacik , William Bialek
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