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Advances in language modeling have led to the development of deep attention-based models that are performant across a wide variety of natural language processing (NLP) problems. These language models are typified by a pre-training process…
ICD coding is the international standard for capturing and reporting health conditions and diagnosis for revenue cycle management in healthcare. Manually assigning ICD codes is prone to human error due to the large code vocabulary and the…
Log-based anomaly detection is fundamentally constrained by training data sparsity. Our empirical study reveals that public benchmark datasets cover less than 10% of source code log templates. Consequently, models frequently misclassify…
In this paper, we explore the task of mapping spoken language utterances to one of thousands of natural language understanding domains in intelligent personal digital assistants (IPDAs). This scenario is observed for many mainstream IPDAs…
Extracting phenotypes from clinical text has been shown to be useful for a variety of clinical use cases such as identifying patients with rare diseases. However, reasoning with numerical values remains challenging for phenotyping in…
Attention mechanisms have improved the performance of NLP tasks while allowing models to remain explainable. Self-attention is currently widely used, however interpretability is difficult due to the numerous attention distributions. Recent…
Cell imaging and analysis are fundamental to biomedical research because cells are the basic functional units of life. Among different cell-related analysis, cell counting and detection are widely used. In this paper, we focus on one common…
Numbers are essential components of text, like any other word tokens, from which natural language processing (NLP) models are built and deployed. Though numbers are typically not accounted for distinctly in most NLP tasks, there is still an…
Attention-based deep networks have been successfully applied on textual data in the field of NLP. However, their application on protein sequences poses additional challenges due to the weak semantics of the protein words, unlike the plain…
Data-centric AI has recently proven to be more effective and high-performance, while traditional model-centric AI delivers fewer and fewer benefits. It emphasizes improving the quality of datasets to achieve better model performance. This…
Clinicians may rely on medical coding systems such as International Classification of Diseases (ICD) to identify patients with diseases from Electronic Health Records (EHRs). However, due to the lack of detail and specificity as well as a…
Various deep learning algorithms have been developed to analyze different types of clinical data including clinical text classification and extracting information from 'free text' and so on. However, automate the keyword extraction from the…
Clinical coding is an administrative process that involves the translation of diagnostic data from episodes of care into a standard code format such as ICD10. It has many critical applications such as billing and aetiology research. The…
Decoding-free reranking methods that read relevance signals directly from LLM attention weights offer significant latency advantages over autoregressive approaches, yet suffer from attention score homogenization: middle-context documents…
Existing prompt-based approaches have demonstrated impressive performance in continual learning, leveraging pre-trained large-scale models for classification tasks; however, the tight coupling between foreground-background information and…
Continual Named Entity Recognition (CNER) is a burgeoning area, which involves updating an existing model by incorporating new entity types sequentially. Nevertheless, continual learning approaches are often severely afflicted by…
Text segmentation plays an important role in various Natural Language Processing (NLP) tasks like summarization, context understanding, document indexing and document noise removal. Previous methods for this task require manual feature…
Automatic extraction of clinical concepts is an essential step for turning the unstructured data within a clinical note into structured and actionable information. In this work, we propose a clinical concept extraction model for automatic…
There are several opportunities for automation in healthcare that can improve clinician throughput. One such example is assistive tools to document diagnosis codes when clinicians write notes. We study the automation of medical code…
Data annotated by humans is a source of knowledge by describing the peculiarities of the problem and therefore fueling the decision process of the trained model. Unfortunately, the annotation process for subjective natural language…