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Prion-like proteins play crucial parts in biological processes in organisms ranging from yeast to humans. For instance, many neurodegenerative diseases are believed to be caused by the production of prion-like proteins in neural tissue. As…

Quantitative Methods · Quantitative Biology 2024-11-19 Johannes G. Borgqvist , Christoffer Gretarsson Alexandersen

We extend our previous stochastic cellular automata based model for areal aggregation of prion proteins on neuronal surfaces. The new anisotropic model allow us to simulate both strong beta-sheet and weaker attachment bonds between…

Biological Physics · Physics 2009-11-10 David L. Mobley , Daniel L. Cox , Rajiv R. P. Singh , Rahul V. Kulkarni , Alexander Slepoy

Neurodegenerative diseases are associated with the assembly of specific proteins into oligomers and fibrillar aggregates. At the brain scale, these protein assemblies can diffuse through the brain and seed other regions, creating an…

Dynamical Systems · Mathematics 2024-07-08 Georgia S. Brennan , Alain Goriely

Prion and prion-like molecules are a type of self replicating aggregate protein that have been implicated in a variety of neurodegenerative diseases. Over recent decades the molecular dynamics of prions have been characterized both…

Populations and Evolution · Quantitative Biology 2022-07-06 Saul Acevedo , Alexander J. Stewart

Prion diseases are invariably fatal and highly infectious neurodegenerative diseases that affect a wide variety of mammalian species such as sheep, goats, mice, humans, chimpanzees, hamsters, cattle, elks, deer, minks, cats, chicken, pigs,…

Biomolecules · Quantitative Biology 2013-12-02 Jiapu Zhang , Yuanli Zhang

Prion diseases caused by the conversion from a soluble normal cellular prion protein into insoluble abnormally folded infectious prions, are invariably fatal and highly infectious degenerative diseases that affect a wide variety of…

Biomolecules · Quantitative Biology 2013-06-04 Jiapu Zhang , Yuanli Zhang

Prion diseases cover a large range of neurodegenerative diseases in humans and animals, which are invariably fatal and highly infectious. By now there have not been some effective therapeutic approaches or medications to treat all prion…

Biological Physics · Physics 2012-10-30 Jiapu Zhang

Many neurodegenerative diseases are related to the propagation and accumulation of toxic proteins throughout the brain. The lesions created by aggregates of these toxic proteins further lead to cell death and accelerated tissue atrophy. A…

Neurons and Cognition · Quantitative Biology 2018-10-17 Johannes Weickenmeier , Ellen Kuhl , Alain Goriely

The need to understand the assembly kinetics of fibril formation has become urgent because of the realization that soluble oligomers of amyloidogenic peptides may be even more neurotoxic than the end product, namely, the amyloid fibrils. In…

Biomolecules · Quantitative Biology 2007-05-23 Ruxandra I. Dima , Bogdan Tarus , John E. Straub , D. Thirumalai

Neurodegenerative diseases are among the leading causes of global mortality, characterized by the progressive deterioration of specific neuron populations, ultimately leading to cognitive decline and dementia. Extracellular vesicles (EVs)…

Prion diseases or called transmissible spongiform encephalopathies are fatal neurodegenerative diseases characterised by the accumulation of an abnormal prion protein isoform (rich in beta-sheets - about 30% alpha-helix and 43% beta-sheet),…

Biological Physics · Physics 2024-08-02 Jiapu Zhang

Neurodegenerative diseases are characterized by the accumulation of misfolded proteins and widespread disruptions in brain function. Computational modeling has advanced our understanding of these processes, but efforts have traditionally…

Prion is a misfolded protein found in mammals that causes infectious diseases of the nervous system in humans and animals. Prion diseases are invariably fatal and highly infectious neurodegenerative diseases that affect a wide variety of…

Biological Physics · Physics 2015-03-25 Jiapu Zhang , Feng Wang

Many neurodegenerative diseases (NDs) are characterized by the slow spatial spread of toxic protein species in the brain. The toxic proteins can induce neuronal stress, triggering the Unfolded Protein Response (UPR), which slows or stops…

Neurons and Cognition · Quantitative Biology 2024-05-28 Elliot M. Miller , Tat Chung D. Chan , Carlos Montes-Matamoros , Omar Sharif , Laurent Pujo-Menjouet , Michael R. Lindstrom

In this paper we will review various aspects of the biology of prions and focus on what is currently known about the mammalian PrP prion. Also we briefly describe the prions of yeast and other fungi. Prions are infectious proteins behaving…

Biomolecules · Quantitative Biology 2011-06-20 Veronica Ines Cacace

Prion diseases are invariably fatal neurodegenerative diseases that affect humans and animals. Unlike most other amyloid forming neurodegenerative diseases, these can be highly infectious. Prion diseases occur in a variety of species. They…

Biological Physics · Physics 2014-12-01 Jiapu Zhang , Feng Wang

Prions are misfolded proteins that transmit their structural arrangement to neighboring proteins. In biological systems, prion dynamics can produce a variety of complex functional outcomes. Yet, an understanding of prionic causes has been…

Soft Condensed Matter · Physics 2025-01-14 Mathieu Ouellet , Dani S. Bassett , Lee C. Bassett , Kieran A. Murphy , Shubhankar P. Patankar

A variety of neurodegenerative diseases are associated with the formation of amyloid plaques. Our incomplete understanding of this process underscores the need to decipher the principles governing protein aggregation. Most experimental and…

Soft Condensed Matter · Physics 2011-07-26 D. Thirumalai , Govardhan Reddy , John E. Straub

A new mathematical model for the dynamics of prion proliferation involving an ordinary differential equation coupled with a partial integro-differential equation is analyzed, continuing earlier work. We show the well-posedness of this…

Analysis of PDEs · Mathematics 2007-05-23 Hans Engler , Jan Pruess , Glenn F. Webb

Self-propelled particles that are subject to noise are a well-established generic model system for active matter. A homogeneous alignment field can be used to orient the direction of the self-propulsion velocity and to model systems like…

Statistical Mechanics · Physics 2024-03-06 Sameh Othman , Jiarul Midya , Thorsten Auth , Gerhard Gompper
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