English
Related papers

Related papers: Coarse-graining bistability with the Martini force…

200 papers

We demonstrate that a quiet state and large-amplitude self-sustained oscillations can co-exist in a carbon nanotube subject to time-independent drive. A feature of the bistability is that it would be hysteresis-free in the absence of noise…

Mesoscale and Nanoscale Physics · Physics 2025-05-01 P. Belardinelli , W. Yang , A. Bachtold , M. I. Dykman , F. Alijani

Vibrated granular matter constitutes a useful system for studying the physics of active matter. Usually, self-propulsion is induced in grains through suitable asymmetry in the particle design. In this paper, we show that a symmetrical mini…

Soft Condensed Matter · Physics 2024-12-25 Shubham Sharma , Deepak Kumar

Coarse graining enables the investigation of molecular dynamics for larger systems and at longer timescales than is possible at atomic resolution. However, a coarse graining model must be formulated such that the conclusions we draw from it…

We study the motion of an overdamped particle connected to a thermal heat bath in the presence of an external periodic potential in one dimension. When we coarse-grain, i.e., bin the particle positions using bin sizes that are larger than…

Statistical Mechanics · Physics 2023-03-01 Lucianno Defaveri , Eli Barkai , David A. Kessler

Multistability is an inseparable feature of many physical, chemical and biological systems which are driven far from equilibrium. In these nonequilibrium systems, stochastic dynamics often induces switching between distinct states on…

Adaptation and Self-Organizing Systems · Physics 2017-11-01 Guram Gogia , Justin Burton

We study the large-time behaviour of Brownian particles moving through a viscous medium in a confined potential, and which are further subjected to position-dependent driving forces that are periodic in time. We focus on the case where…

Statistical Mechanics · Physics 2009-11-10 Sreedhar B. Dutta , Mustansir Barma

We computationally study suspensions of slow and fast active Brownian particles that have undergone motility induced phase separation and are at steady state. Such mixtures, of varying non-zero activity, remain largely unexplored even…

Soft Condensed Matter · Physics 2024-07-11 Nicholas J Lauersdorf , Ehssan Nazockdast , Daphne Klotsa

We undertake a detailed numerical study of the twin phenomena of stochastic and vibrational resonance in a discrete model system in the presence of bichromatic input signal. A two parameter cubic map is used as the model that combines the…

Chaotic Dynamics · Physics 2009-11-13 K. P. Harikrishnan , G. Ambika

We study a simple micro-mechanical device that does not lose its snap-through behavior in an environment dominated by fluctuations. The main idea is to have several degrees of freedom that can cooperatively resist the de-synchronizing…

Biological Physics · Physics 2017-09-13 Matthieu Caruel , Lev Truskinovsky

The far-from-equilibrium dynamics of two crystalline two-dimensional monolayers driven past each other is studied using Brownian dynamics simulations. While at very high and low driving rates the layers slide past one another retaining…

Soft Condensed Matter · Physics 2007-05-23 Moumita Das , G. Ananthakrishna , Sriram Ramaswamy

Worm-like filaments that are propelled homogeneously along their tangent vector are studied by Brownian dynamics simulations. Systems in two dimensions are investigated, corresponding to filaments adsorbed to interfaces or surfaces. A large…

Soft Condensed Matter · Physics 2016-08-23 Rolf E. Isele-Holder , Jens Elgeti , Gerhard Gompper

Hard spheres in Newtonian fluids serve as paradigms for Non-Newtonian materials phenomena exhibited by colloidal suspensions. A recent experimental study (Cheng et al. 2011 Science, 333, 1276) showed that upon application of shear to such a…

Soft Condensed Matter · Physics 2013-10-07 Xinliang Xu , Stuart A Rice , Aaron R Dinner

Experiments on a chain of coupled pendula driven periodically at one end demonstrate the existence of a novel regime which produces an output frequency at an odd fraction of the driving frequency. The new stationary state is then obtained…

Pattern Formation and Solitons · Physics 2009-11-13 Ramaz Khomeriki , Jerome Leon

We report the experimental observation of a square crystalline phase in a vibrated binary mixture of spherical grains. This structure spontaneously forms from a disordered state, consistently with predictions obtained in an equilibrium…

Soft Condensed Matter · Physics 2025-12-09 A. Plati , R. Maire , F. Boulogne , F. Restagno , F. Smallenburg , G. Foffi

We investigate the nonlinear dynamics of microcantilevers. We demonstrate mechanical stiffening of the frequency response at large amplitudes, originating from the geometric nonlinearity. At strong driving the cantilever amplitude is…

Mesoscale and Nanoscale Physics · Physics 2010-11-08 Warner J. Venstra , Hidde J. R. Westra , Herre S. J. van der Zant

During our previous modeling using all-atom molecular dynamics, we have identified several foldamers whose nanoscale behavior resembles that of classic bistable machines, namely the Euler archs and Duffing oscillators. However, time…

Mesoscale and Nanoscale Physics · Physics 2026-01-13 Alexander D. Muratov , Vladik A. Avetisov

We investigate the resonance type behaviour of an overdamped Brownian particle in a bistable potential driven by external periodic signal. It has been shown previously that the input energy pumped into the system by the external drive shows…

Statistical Mechanics · Physics 2007-05-23 Debasis Dan , A. M. Jayannavar

This contribution reports on numerical simulations of 2D granular flows on erodible beds. The broad aim is to investigate whether simple flows of model granular matter exhibits spontaneous oscillatory motion in generic flow conditions, and…

Soft Condensed Matter · Physics 2012-11-27 Lydie Staron

Hybrid multiscale modelling has emerged as a useful framework for modelling complex biological phenomena. However, when accounting for stochasticity in the internal dynamics of agents, these models frequently become computationally…

Quantitative Methods · Quantitative Biology 2021-05-11 Daria Stepanova , Helen M. Byrne , Philip K. Maini , Tomás Alarcón

We experimentally investigate the interplay of Turing and Faraday (modulational) instabilities in a bistable passive nonlinear resonator. The Faraday branch is induced via parametric resonance owing to a periodic modulation of the resonator…